Gene Information

Name : HCH_00397 (HCH_00397)
Accession : YP_431733.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Unknown
Product : PBSX family phage portal protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG5518
EC number : -
Position : 405330 - 406316 bp
Length : 987 bp
Strand : +
Note : TIGRFAMsMatches:TIGR01540

DNA sequence :
ATGAGTAAATCGACTTCGCCCATGGCGTTTAGCTTTGGCGCGCCCGAGGCTGTTTTAGACACGACGCTGACCTCTTACCT
GGGCGTGTTTTTAAATCCCCATGGCGACTATTACGCGCCGCCGGTCAGTCTTACCGGGCTGGCCAAACTGCTGCGCGCCA
ACGCCCATCACGGGACCATTCCCTATTTTAAGCGCAACATGCTGCGTAAGTTTTACGTGCCGTCGCCCGTGCTCAGCGCC
ACGGATCTGGAGAACGCCGGCTTCGATTACCTGGTGTTTGGCATGTGCTACTTTCAAAAGCTCTTTAACCGCCTTGGTCA
GATCGTCCGCCTGAAACACATTCCGGCGTTGAATATGCGGCGCATGAAAGCCCCGGATCAGTTCTGTTTGTTGCAGCCAA
ACCAGGCGGACCCGTTGGCGTTTCGTCCGGGGGAAATCATTCAGTTAAAAGAGTACGACGTGAATCAGCAAATCTATGGC
GTTCCCCAGTACCTGGGCGGGCTACAATCCGTTTTACTGAATGAGAGCGCAACGCTATTTCGGAGGAAGTACTACAACAA
CGGCGCGCACATGGGCTTCATCTTCTACACCGCCGACGCCCAGTTGGACCCCGAGGACGAGCAATCCCTAAAAGAACAAA
TCCGCGCCAGCAAAGGCGTGGGCAATTTTAGAAGCCTGTACATCAACATACCCGGCGGAAAACCCGACTCCGTGAAGATC
ATTCCCGTGGGCGATATCGCCACCAAGGACGAATTCGAGCGGGTAAAGAATCTAAGCCGTAACGATGTATTAAGCATGTG
GCGTATTCAGCCGGCGCTGGCCGGCATCATGCCGGAGAATACTGGAGGCTTTGGAGACATCGAAAAGATCAGCCGCGTTT
ACTATGAAAACGAAGTGGTCCCCATGCAGCATGTGTTTTTAAAACTTAATGATGGCCTACAGGCGCAGAAGCAAATCCGC
TTCGTAGAGATAATTAGCCCTAAATAG

Protein sequence :
MSKSTSPMAFSFGAPEAVLDTTLTSYLGVFLNPHGDYYAPPVSLTGLAKLLRANAHHGTIPYFKRNMLRKFYVPSPVLSA
TDLENAGFDYLVFGMCYFQKLFNRLGQIVRLKHIPALNMRRMKAPDQFCLLQPNQADPLAFRPGEIIQLKEYDVNQQIYG
VPQYLGGLQSVLLNESATLFRRKYYNNGAHMGFIFYTADAQLDPEDEQSLKEQIRASKGVGNFRSLYINIPGGKPDSVKI
IPVGDIATKDEFERVKNLSRNDVLSMWRIQPALAGIMPENTGGFGDIEKISRVYYENEVVPMQHVFLKLNDGLQAQKQIR
FVEIISPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4628 NP_458710.1 probable capsid portal protein Not tested SPI-7 Protein 5e-58 44
t4321 NP_807917.1 capsid portal protein Not tested SPI-7 Protein 5e-58 44
unnamed ABR13463.1 predicted capsid packaging protein Not tested PAGI-6 Protein 9e-56 42