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Name : gspF (HCH_03936) Accession : YP_435081.1 Strain : Hahella chejuensis KCTC 2396 Genome accession: NC_007645 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4076553 - 4077779 bp Length : 1227 bp Strand : - Note : TIGRFAMsMatches:TIGR02120 DNA sequence : ATGGCAGCATTTGATTTTAAAGCCCTGGACCAGAAGGGGCGTCCGCAAAAAGGCGTTCTTGAAGCGGACAGCGCCCGTCA GGTCAGGCAGCAGATTCGTGATAAAGGATGGACGCCTCTGGAAGTCACCCAGGCGTCTGAAAAGCAGAGTAATAAAAATG GCGGAGGCGGCGGCTTTCGTCCCCGCGGAAGCCGGTTGGGCGCTGCTGACCTTGCATTGTTGACCCGTCAGATCGCTACC TTGATCCAGTCTGGCATCCCCGTGGAGGAAACGCTGAGCGCGGTGGCTTCGCAAAGTGAAAAAGCCAAAGTCAGAAGTAT GATGCTGGCGGTGCGTGCGAAGGTATTAGAGGGCTATTCTCTGGCGGATAGCCTTAGCGAGTTTCCCAGTGCGTTTCCTG AACTTTATCGTTCAACGGTAGCGGCCGGGGAGCACGCAGGTCATCTGGATCTGGTGCTCAACCGTTTGGCGGATTACACC GAGCAGCGGCAGATGAGCCGGCAGAAAATCCAGCTTGCCGCCATTTACCCTATTATCCTCACCTTCGTGGCGTTCGGCAT CGTTGGTTTCCTGCTGGGTTACGTGGTGCCTGACATCATCAAAGTGTTCGTCAGTAAAGGGCAGGCGTTGCCCGCTTTAA CTCAGGTGATCCTGGCGCTGAGCGACTTTGTCGCCAACTACGCGCTGCTTATTGTGGCCGCTCTGGTCATCGCCTTCTTC TCCTTCACATACGCGATGAAGAAAGAAGGGTTTCGACTTCAGGTGCATCGGCAATTGCTGCACCTGCCATTCACTGCGAA GATGTCGCGGGGAATCAATACCGCTCGTTTCGCCAGTACGCTCAGTATTCTTAACAGCAGCGGCGTACCGTTGGTTGACG CCATGCGCATCGCTGGAGAGGTGTTGAGCAATCAATGGTTGAAACTACGGGTCGCCGAAGCGGCGCAAAAAGTGCGGGAA GGCGGCAGTCTGTACAAGTGCCTGGAGCAGACCGGTTATTTTCCGCCGATGATGATTCATATGATCGCCAGTGGCGAGGC CAGCGGCGAGTTGGGGGAAATGCTGGAAAGGACCGCCAGCAGCCAGGAAAACGATCTGCAAAGCCGCATCGCAACGATGG TCGGACTATTTGAACCCTTGATGCTTTTGGTCATGGGCGGCGTGGTGTTGATTATCGTTATGGCGATCATGTTGCCGATT TTGAGCATGAGCGATCTGGTTGGTTAA Protein sequence : MAAFDFKALDQKGRPQKGVLEADSARQVRQQIRDKGWTPLEVTQASEKQSNKNGGGGGFRPRGSRLGAADLALLTRQIAT LIQSGIPVEETLSAVASQSEKAKVRSMMLAVRAKVLEGYSLADSLSEFPSAFPELYRSTVAAGEHAGHLDLVLNRLADYT EQRQMSRQKIQLAAIYPIILTFVAFGIVGFLLGYVVPDIIKVFVSKGQALPALTQVILALSDFVANYALLIVAALVIAFF SFTYAMKKEGFRLQVHRQLLHLPFTAKMSRGINTARFASTLSILNSSGVPLVDAMRIAGEVLSNQWLKLRVAEAAQKVRE GGSLYKCLEQTGYFPPMMIHMIASGEASGELGEMLERTASSQENDLQSRIATMVGLFEPLMLLVMGGVVLIIVMAIMLPI LSMSDLVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-65 | 46 |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 4e-65 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_435081.1 | general secretion pathway protein F | VFG0181 | Protein | 7e-99 | 59 |
| gspF | YP_435081.1 | general secretion pathway protein F | VFG2049 | Protein | 8e-63 | 45 |
| gspF | YP_435081.1 | general secretion pathway protein F | VFG1870 | Protein | 3e-73 | 42 |
