Gene Information

Name : HCH_03263 (HCH_03263)
Accession : YP_434447.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 3359148 - 3359795 bp
Length : 648 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACGTTGCCTGATCCTTTTTACCTGACCCTCGGGTTGGCGGGCATCGCTCTGATTCCCTTCTTTGCGGTGATGGCCAC
GTCCTTCGTGAAGATCGCCGTAGTCTTAGGGTTACTGCGTAACGCTTTAGGCATCCAGCAGATCCCGCCGAACATGGCGC
TCTACGGGTTAGCCATCATCCTGACCGCCTACATTATGGCGCCGGTGGGTATCTCTGCTTACAACGAACTCAGCACTAAA
CCGATCTCTCTGGAGAATACCCAGGAGCTGAAAGCGCTGATGGATACCGCTTCGCAACCTTATAAAGAATTTCTGCAACG
GCATGGCTCGGAGGATGAGCAAACGTTCTTTCACGAGACGGCGGCGGAAATCTGGCCGGAAGATGTCGCGAAAGGACTGG
AGAAAGACAGTTTTTTCGTGCTGATTCCCGCCTTCACCGCCAGCGAACTGACCAGCGCCTTTGAAATCGGGTTTCTGATT
TATCTGCCCTTCCTGGCGATCGACTTGATCATCTCCAACATCCTGCTGGCCATGGGCATGATGATGGTCTCCCCCATGAC
CATTTCCCTGCCCTTCAAGCTGTTGTTATTCGTGCTGATGGACGGATGGACGCGTCTTATCCATGGGCTGGTGCTCGCCT
ATCAATAG

Protein sequence : 
MTLPDPFYLTLGLAGIALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGISAYNELSTK
PISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKGLEKDSFFVLIPAFTASELTSAFEIGFLI
YLPFLAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLMDGWTRLIHGLVLAYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-59 65
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-48 52
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-46 51
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-47 51
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-47 51
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-47 51
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-46 51
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-51 51
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-51 50
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-51 50
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-51 50
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 7e-51 50
unnamed AAL06354.1 EscR Virulence LEE Protein 4e-46 50
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-41 49
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-41 49
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-41 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-51 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-51 49
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-51 49
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-44 49
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 7e-44 49
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-43 48
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-39 48
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-40 48
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-40 48
escR AAL57527.1 EscR Virulence LEE Protein 4e-47 48
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-47 48
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-46 48
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-47 48
escR AAC31528.1 L0049 Virulence LEE Protein 4e-47 48
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-47 48
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-47 48
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-47 48
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-47 48
escR AAK26700.1 EscR Virulence LEE Protein 4e-47 48
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-47 48
escR AAC38369.1 EscR Virulence LEE Protein 2e-46 48
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-38 47
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-38 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-40 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-45 46
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 4e-39 43
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 9e-40 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-31 42
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-31 42
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-31 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-31 41
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_03263 YP_434447.1 type III secretion system protein VFG0188 Protein 2e-62 65
HCH_03263 YP_434447.1 type III secretion system protein VFG0394 Protein 4e-59 65
HCH_03263 YP_434447.1 type III secretion system protein VFG0044 Protein 4e-52 54
HCH_03263 YP_434447.1 type III secretion system protein VFG0519 Protein 2e-47 51
HCH_03263 YP_434447.1 type III secretion system protein VFG0827 Protein 2e-47 48
HCH_03263 YP_434447.1 type III secretion system protein VFG0715 Protein 1e-46 48
HCH_03263 YP_434447.1 type III secretion system protein VFG2338 Protein 1e-33 44
HCH_03263 YP_434447.1 type III secretion system protein VFG2494 Protein 1e-36 44
HCH_03263 YP_434447.1 type III secretion system protein VFG0551 Protein 5e-32 42
HCH_03263 YP_434447.1 type III secretion system protein VFG2455 Protein 9e-39 41
HCH_03263 YP_434447.1 type III secretion system protein VFG1773 Protein 2e-36 41