Gene Information

Name : HCH_03260 (HCH_03260)
Accession : YP_434444.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretory pathway subunit EscU
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 3356886 - 3357923 bp
Length : 1038 bp
Strand : -
Note : COG4792

DNA sequence : 
ATGAGTGAAAAGACCGAAAAGCCCACCCCGAAAAAGCTCCTCGACGCCCGTAAAAAGGGTCAGGTGGCGCACAGTAAAGA
GCTGGTTTCCACCGCCATGATGATCGCCATGTACGGACTCCTGTTCGCTTCCGGTTATAGTTTGGTGGAAGCGCTGCAAA
GCCTGATCGATTTGCCCGCGCGCTTTTACGGTCAGCCTTTCGGGGAAGCATTGCAGGCGGTGCTGAATGGCGTGTTCGAG
AAGAGTCTGGACATCCTGCTCCCTTTTATCCTGTTGGTGATCGTCACTGCAGTGGTCTCTAATGTCGGGCATGTCGGCCC
GTTGTTCGCCATGGAGTCGGTCAAGTTCGATCTTAAGAAAATCGACCCGGTGGAAGGCGTCAAGAAGCTGTTTTCAGTAC
GGAGCCTGATGGAGTTGCTCAAGTCCATCGTAAAAATCCTGTTCCTCTCCATCCTGATCTACTGGGTAATCACCGCCAAT
CTCAACGACATCCGCAAACTCCCCCACTGCGGCTCAGACTGCATCATGCCCTTTATTGGCCACCTGATGCTGCAACTGGC
GATGGTGTCCATGGTCGCGTTTGTGATCGTAGCAGTGCTGGATTTTCTTTATCAGAAGCACGAACACCAAAAACAACTGC
GCATGACCAAGGATGAAGTGAAACGGGAATACAAAGACGCTGAGGGCAACCCGGAAGTCATCGGCCAACGCAAACAGATT
CACCGTGAAATGCTGGACGGCGGCATGATCAGCCAAATCAAAAAAGCCTCCGTCATCGTCACCAACCCCACCCACATCGC
CATCGGCATCTACTACGACGGCGACAAACGCAGCCTGCCGACCGTCATTCTCAAAGCCAAAAACACCACCGCCCAAAGAG
TAAAGAAAATCGCCGCCAAAGAAGGCGTCCCCATCATGGAAAACATCCCCCTCGCCCGCGCCCTATACGCCCAGGCAGAG
CTGGAGAACTACATCCCTTCAGAGTTGATAGAACCGGTGGCGGAAGTGTTGAAGTGGGTGGCTGGGTTGGAGAGTTAG

Protein sequence : 
MSEKTEKPTPKKLLDARKKGQVAHSKELVSTAMMIAMYGLLFASGYSLVEALQSLIDLPARFYGQPFGEALQAVLNGVFE
KSLDILLPFILLVIVTAVVSNVGHVGPLFAMESVKFDLKKIDPVEGVKKLFSVRSLMELLKSIVKILFLSILIYWVITAN
LNDIRKLPHCGSDCIMPFIGHLMLQLAMVSMVAFVIVAVLDFLYQKHEHQKQLRMTKDEVKREYKDAEGNPEVIGQRKQI
HREMLDGGMISQIKKASVIVTNPTHIAIGIYYDGDKRSLPTVILKAKNTTAQRVKKIAAKEGVPIMENIPLARALYAQAE
LENYIPSELIEPVAEVLKWVAGLES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 9e-73 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_03260 YP_434444.1 type III secretory pathway subunit EscU VFG0397 Protein 4e-66 47
HCH_03260 YP_434444.1 type III secretory pathway subunit EscU VFG0185 Protein 2e-67 45