Gene Information

Name : HCH_03247 (HCH_03247)
Accession : YP_434432.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : type III secretory pathway, lipoprotein EscJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 3343815 - 3344612 bp
Length : 798 bp
Strand : +
Note : COG4669

DNA sequence : 
ATGAAAAACACATCCACCCCATACCGATTCTTTCGTCGAACGCGGCTCTTGCTGGGCTTTCTGTTCGTGTTCATCTTGAG
CGGTTGTAAAGAGACGCTGTACAGCGATCTGACTGAGAAAGAAGGCGCGGAGATGCTGTCGATTCTGCTGGAGGAGGGCC
TGGAGGCGGAAAAAGTCCCAGGCCAGAAAGGGCAGACTGTTGCTCTTAGCGTTGAGCGCGCGCAGTTGTCCCAGGCGATT
CGCCTGCTAAAAAGCCGGGGCTATCCCCGCGATGACTTCACCAGCGTCGGCGAGCTGTTCAAGAAAGACGGCCTGATCTC
ATCGCCCCTGGAAGAGCGGGCGCGCTACATATACGGGCTGTCTCAGGAGATCGCCGCGACCCTGTCGCAACTGGACGGGG
TGATTACCGCCCGCGTACATGTGGTCATGCCGGAGGTGGAGAACAAAAAAGCGCCGTTGAAGGTGTCCTCCGCCTCGGTG
TTCATCAAGTATGAAAGCACCGTCAATCTGGACGACTTCGTGCCGCAGATTAAGTTGCTGGTGAACAACAGCATAGAAGG
ACTCAGCTATGACAACATCGCCGTCGCGCTATTTCCGACCCAGGCCGCGCCGGTCACTGGCGGCGCTACGATGGAAAGCG
TGCTTTCCGTAAATGTGGCCGCCGGCTCGATTGATCGCCTGTATGGATTGTTCGCCATTGGCGGGGTGCTGTTGATCTGC
GCTCTAGGCGGCAATCTGCTGTTGTATCGACGTATAAAACAACGCAGCGCTCACACACTGGCCATAGAGCAGGCGTAA

Protein sequence : 
MKNTSTPYRFFRRTRLLLGFLFVFILSGCKETLYSDLTEKEGAEMLSILLEEGLEAEKVPGQKGQTVALSVERAQLSQAI
RLLKSRGYPRDDFTSVGELFKKDGLISSPLEERARYIYGLSQEIAATLSQLDGVITARVHVVMPEVENKKAPLKVSSASV
FIKYESTVNLDDFVPQIKLLVNNSIEGLSYDNIAVALFPTQAAPVTGGATMESVLSVNVAAGSIDRLYGLFAIGGVLLIC
ALGGNLLLYRRIKQRSAHTLAIEQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 2e-44 49
hrpB3 AAF61284.1 HrpB3 Virulence Hrp PAI Protein 3e-40 43
hrpB3 YP_198727.1 protein HrpB3 Virulence Hrp PAI Protein 4e-40 43
hrpB3 BAB07855.1 HrpB3 Virulence Hrp PAI Protein 3e-40 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_03247 YP_434432.1 type III secretory pathway, lipoprotein EscJ VFG0218 Protein 2e-43 51
HCH_03247 YP_434432.1 type III secretory pathway, lipoprotein EscJ VFG0409 Protein 1e-43 49
HCH_03247 YP_434432.1 type III secretory pathway, lipoprotein EscJ VFG0051 Protein 1e-38 44