Gene Information

Name : HCH_01427 (HCH_01427)
Accession : YP_432713.1
Strain : Hahella chejuensis KCTC 2396
Genome accession: NC_007645
Putative virulence/resistance : Virulence
Product : sigma 54-dependent transcriptional activator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1430177 - 1431538 bp
Length : 1362 bp
Strand : -
Note : Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204

DNA sequence : 
ATGAACGATCCCATCGCCAGCAACAACGATATTCTTGTCGTCGATGACGACTCCGGGTTATTGCAACTGATGTCCATGCG
TCTGAAAGCGCTGGGATACGCCTCCCGGTTGGTGGAAAGCGGCGAGGAGGCGTTGCGGGAGATTCGCCGTAAGCAACCGA
TTCTGGTGATATCCGACCTGAAAATGGACGGCATGGATGGCATTCAATTGCTGGAGCATATCCAAAGGGACTGGCCCGGC
ACCCCGGTAATCATGCTAACCGCCCACGGCTCGATTTCAGAGGCGGTGGTCGCCACCCAAAAAGGCGCATTCGCTTTTCT
CACCAAACCGGTGGACCGCGAAGAACTGCGCACAACGATCGAAAAAGCCCTGGTTGGACACTCCGCCAACGAAAGCGCCG
CCAATGTATTTCAATCCATTGTTACTCGCAGCGCCAAGCTCTATCAGCTACTGGAGCAGGCGAAAATGGTGGCGCAAAGC
GACGTCAATGTATTGATTCAAGGGGAAAGCGGCACCGGTAAAGAGGTGCTGGCGCAGGCAATCCATGACGCCAGTCCGCG
TCGGGACAAGCCTTTCATCCCGATCAACTGCGGCGCCATACCTGATGAATTGATGGAATCCGAACTGTTCGGTCATAAAA
AAGGTTCCTTCACCGGCGCCGTTCGCGATCATGTGGGACTGTTTGAAACCGCCGACGGCGGCACCGTATTCCTTGATGAG
ATTGGCGACATGCCCATGCATCTGCAGGTCAAGCTGCTACGAGTGCTGCAAGAGCGCAAAATTAAACCTATCGGCTCCAC
CACCTATATCGATGTAGACATTCGCATCTTATCCGCCACCCACAAAGACCTGCTCAACATGATCGAAGAGCAGACATTCC
GCGAGGACCTGTACTACCGGCTCAATGTAGTCAATTTGGTGCTGCCGCCTCTGCGCGAACGCCGTGAGGATATCCCGCTG
CTGCTGAGCCATTTTCTGGAGCGCGTGGCCCAACGCTACGGCCAAAGCTGCAAGCGCATTGCGCCGGACGCCCTGGACGC
CCTGATTTCTTATTCCTGGCCGGGCAACATCCGCGAATTGATCAACCTTAGCGAGAAATGTCACGCTCTCAATGCCGGCG
CCGTGATTTCCCGCCAATTGATAGAACAGGCGCTGCCCCGGTTCCAACGGGAACAGAATCAGGAGATGACGCTTTCCGAG
GCGAAACGCATCTTTGAGAAAGAGTACGTGGAAAAACTACTGAGCATGACCAATGGCAACATCCCGGAAGCCGCCCGGAT
GGCGGACCGTAATCGCTCAGACTTCTACAAAATCGTGAAAAAGCACAGTATTGACCCCGAACTGTATAAAGTTGGTCAAT
AA

Protein sequence : 
MNDPIASNNDILVVDDDSGLLQLMSMRLKALGYASRLVESGEEALREIRRKQPILVISDLKMDGMDGIQLLEHIQRDWPG
TPVIMLTAHGSISEAVVATQKGAFAFLTKPVDREELRTTIEKALVGHSANESAANVFQSIVTRSAKLYQLLEQAKMVAQS
DVNVLIQGESGTGKEVLAQAIHDASPRRDKPFIPINCGAIPDELMESELFGHKKGSFTGAVRDHVGLFETADGGTVFLDE
IGDMPMHLQVKLLRVLQERKIKPIGSTTYIDVDIRILSATHKDLLNMIEEQTFREDLYYRLNVVNLVLPPLRERREDIPL
LLSHFLERVAQRYGQSCKRIAPDALDALISYSWPGNIRELINLSEKCHALNAGAVISRQLIEQALPRFQREQNQEMTLSE
AKRIFEKEYVEKLLSMTNGNIPEAARMADRNRSDFYKIVKKHSIDPELYKVGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-56 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-56 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_01427 YP_432713.1 sigma 54-dependent transcriptional activator BAC0467 Protein 1e-68 46
HCH_01427 YP_432713.1 sigma 54-dependent transcriptional activator BAC0089 Protein 3e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HCH_01427 YP_432713.1 sigma 54-dependent transcriptional activator VFG1214 Protein 2e-63 47
HCH_01427 YP_432713.1 sigma 54-dependent transcriptional activator VFG1249 Protein 3e-57 45
HCH_01427 YP_432713.1 sigma 54-dependent transcriptional activator VFG1248 Protein 3e-49 42