Gene Information

Name : fliP (Rru_A2830)
Accession : YP_427914.1
Strain : Rhodospirillum rubrum ATCC 11170
Genome accession: NC_007643
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 3261043 - 3261837 bp
Length : 795 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGACCGCCCTTTCCCAGCCGGGCACGCCGCCGAACCGATGGGCGTGGATGCGCCGGGGCGCGCTCGCGCTTGGCCTTGG
CCTTGGTCTTTGCCTGCTGTCGAGTTTGGCCGGCGAGGCGATGGCCCAATCGGTCAATGTCGATCTCGGCACGGGCGGCG
GCTCGACCACGGCGCGGATCATCCAGTTGGTCGGCCTGCTCACCGTGCTCAGCGTCGCCCCCGGGCTGCTGATCATGGTC
ACAAGCTTCACCCGGATCGTCGTCGTGCTGTCGATCCTGCGTCAGGCCCTGGCCACCCAATCGACGCCGCCCAACATGGT
GATGGTCAGCCTCGCCCTGTTCATGACCTTCTTCATCATGGCCCCGACCTTCCAACAGGCCTGGGATCAGGGGCTGTCGC
CGTTGATCCAGGAACAGATCAGCGAAGAAGAGGCCTTCACCCGCACGGTCGCCCCCTTCCGCACCTTCATGCTCGCCCAT
GTCCGCGACAAGGACCTGGAGCTGTTCATGTCCTTCAACAAGGAAACCGCCGCGCAGCCCTCCGATGTCTCGACCCAGGC
CCTGATCCCGGCCTTCATGATCAGCGAACTGCGCCGCGCCTTCGAAATCGGCTTCCTGATCTTCCTGCCCTTCGTGGTGA
TCGACATGGTGATCGCCTCGGTCCTGATGTCGATGGGCATGATGATGCTGCCGCCGATGATGCTGGCCATGCCCTTCAAG
CTGATCTTCTTCGTGCTGGTCGATGGCTGGTATCTGGTGATCGGCTCCTTGCTCTCAAGCTACGGCACAAGCTGA

Protein sequence :
MTALSQPGTPPNRWAWMRRGALALGLGLGLCLLSSLAGEAMAQSVNVDLGTGGGSTTARIIQLVGLLTVLSVAPGLLIMV
TSFTRIVVVLSILRQALATQSTPPNMVMVSLALFMTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRTFMLAH
VRDKDLELFMSFNKETAAQPSDVSTQALIPAFMISELRRAFEIGFLIFLPFVVIDMVIASVLMSMGMMMLPPMMLAMPFK
LIFFVLVDGWYLVIGSLLSSYGTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-23 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-44 52
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG2338 Protein 7e-39 49
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG1259 Protein 7e-44 49
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-42 46
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG0394 Protein 6e-26 42
fliP YP_427914.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-25 41