Gene Information

Name : amb0403 (amb0403)
Accession : YP_419766.1
Strain : Magnetospirillum magneticum AMB-1
Genome accession: NC_007626
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 434905 - 436056 bp
Length : 1152 bp
Strand : +
Note : ISmag11,orf3; similar to IS66 family

DNA sequence :
TTGGAGATCGCCCGGCTCCGGCGCGAGCGCTTCGGCCAGTCGGCCGAGCGCAGCACCCGCATCGAGCAGCTTGAACTGTC
CTTGGAGGATCTGGAGGAGACCGCCGCCGCGGTCGAAGCCGCCGCCGAGACGGCTGAGGTGCAGGCCCATCCCCGCTCTA
AGCCGGCGCGGCGCCTGTTGCCCGAGCATCTGCCCCGTGTCCGGGTGGTCGAGCCGTCACCGTCGGCGTGTCCCTGCTGC
GGTGGCAAGCTGCACAAACTGGGCGAGGACATCACCGAGACGCTGGAGCGCATCCCGGCCAAGTGGCGGGTGATCCAGCA
TGTGCGGGAGAAATTCACCTGCCGGAGCTGCGAGGCGATCACCCAGCCGCCGGCGCCGTTCCATCCCATCGCGCGCGGCC
GGGCCGGCGCCAATCTGCTGGCCGAGGTGGTGTTCGCGAAATTCGGCCTGCACCTGCCGCTACACCGCCAGAGCGCGAGC
TTCGCCCGCGAGGGCGTCGAGATCGACGTCTCCACCCTGGCCGACTGGGTCGGCGCGGTGAGCGTGGCGCTGAAACCGCT
GGTCGAGGCCATCGCTGACCATGCCCAGGCGGGCCCGCGCGTTCATGTGGACGACACGCCGGTGCCGGTGCTGGCGCCGC
GCGCGCAGGCGCGCTCGGATCAAACAATGGCGGCGAAGCCGGATGGCAAGACGAAGACCGGCCGATTATGGACCATGGTC
CGTGATGACCGCCCGTTCGGCGGCAATGATCCGCCGGCCGCAGCCTATTTCTACTCGCCCGACCGCAGTGGCGAGCATGC
CGAAGGATTCCTTACCGGCTTCAGCGGCATCATGCAGGCCGACGCCTTCTCCGGCTTCGGGCGGCTGTACCAGCAGGGCG
CCATCGTCGAGGCGGCGTGCTGGGCGCACGGACGACGGAAGTTCTTCGATCTGGCCCAGTTGAAGAAGGCCCCCATCGCC
ATCGAGGCGGTGAAGCGCATCGACGCCCTGTTCGCCATCGAGCGCGACATCGCCGGCCTATCGCCCGAGGCGCGGCTGAC
TGCGCGGGCCGGGCTATCCCGACCGCTGGTGGACGATCTGGCGGTATGGCTGCACCAGAAGCGGGCCGGCCGGGCAAGTC
GGATACCGCCAAGGCCATGGATTATCTGCTGA

Protein sequence :
MEIARLRRERFGQSAERSTRIEQLELSLEDLEETAAAVEAAAETAEVQAHPRSKPARRLLPEHLPRVRVVEPSPSACPCC
GGKLHKLGEDITETLERIPAKWRVIQHVREKFTCRSCEAITQPPAPFHPIARGRAGANLLAEVVFAKFGLHLPLHRQSAS
FAREGVEIDVSTLADWVGAVSVALKPLVEAIADHAQAGPRVHVDDTPVPVLAPRAQARSDQTMAAKPDGKTKTGRLWTMV
RDDRPFGGNDPPAAAYFYSPDRSGEHAEGFLTGFSGIMQADAFSGFGRLYQQGAIVEAACWAHGRRKFFDLAQLKKAPIA
IEAVKRIDALFAIERDIAGLSPEARLTARAGLSRPLVDDLAVWLHQKRAGRASRIPPRPWIIC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 5e-53 45
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-56 44
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-57 44
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 4e-58 44
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-63 44
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 3e-62 43
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 3e-62 43
tnp AEA34686.1 transposase Not tested Not named Protein 6e-63 43
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 5e-63 43
unnamed AAC31494.1 L0015 Not tested LEE Protein 4e-63 43
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 5e-63 43
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 4e-63 43
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 5e-63 43
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 4e-63 43
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 9e-63 43
unnamed AAL08460.1 unknown Not tested SRL Protein 5e-62 42
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 2e-59 42
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 2e-59 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
amb0403 YP_419766.1 transposase VFG1516 Protein 3e-53 45
amb0403 YP_419766.1 transposase VFG1513 Protein 8e-57 44
amb0403 YP_419766.1 transposase VFG0793 Protein 2e-63 43
amb0403 YP_419766.1 transposase VFG1051 Protein 3e-62 42