Gene Information

Name : set4 (SAB0381)
Accession : YP_415882.1
Strain : Staphylococcus aureus RF122
Genome accession: NC_007622
Putative virulence/resistance : Virulence
Product : superantigen-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 417271 - 417969 bp
Length : 699 bp
Strand : +
Note : these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation

DNA sequence : 
ATGAAATTTACTGCGATAGCTAAAGCGATATTTGTATTAGGAATATTAACAACAAGTGTAATGATAACAGAAAATCAATC
GGTTAATGCAAAAGGAAAGTATGAAAAAATGAACCGTTTATATGATACAAACAAGTTACATCAATACTATTCAGGACCTA
GTTATGAGTTAACAAATGTTAGTGGACAAAGTCAAGATTATTATGAGACTAACGTTTTGCTTTTTAACCAACAAAATCAA
AAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATATAAAGAAAAAACGCATGGCCTCGATGTCTTTGCGGTACC
AGAATTAGTAGATTTAGATGGTAGAATATTTAGCGTTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTC
TAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAG
GAAGAAGTGTCATTGAAGGAACTTGATTTTAAAATAAGAAAACTGTTGATTAAAAAATACAAACTGTATGAAGGGTCAGC
TGATAAAGGTAGAATTGTTATTAATATGAAAGATGAAAATAAGTATGAAATTGATTTAAGTGATAAATTAGATTTCGAGA
GTATGGCAGATGTCATTAGTAGTGAACAAATTAAGAACATCGAAGTGAATTTGAAATAA

Protein sequence : 
MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNVSGQSQDYYETNVLLFNQQNQ
KFQVFLLGKDENKYKEKTHGLDVFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQK
EEVSLKELDFKIRKLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFESMADVISSEQIKNIEVNLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
set12 NP_370951.1 superantigen-like protein Virulence vSa¥á Protein 2e-92 98
set12 NP_373638.1 superantigen-like protein Virulence vSa¥á Protein 2e-92 98
set8nm YP_001331429.2 superantigen-like protein Virulence vSa¥á Protein 4e-92 97
SAUSA300_0402 YP_493116.1 superantigen-like protein Virulence vSa¥á Protein 4e-92 97
SAS0391 YP_042516.2 superantigen-like protein Virulence vSa¥á Protein 3e-91 97
set23 NP_645206.1 superantigen-like protein Virulence vSa¥á Protein 3e-91 97
SAKOR_00411 YP_008490595.1 Exotoxin Virulence vSa¥á Protein 7e-92 97
SAS0392 YP_042517.1 superantigen-like protein Virulence vSa¥á Protein 4e-62 67
set24 NP_645207.1 superantigen-like protein Virulence vSa¥á Protein 4e-62 67
set5 YP_039881.1 superantigen-like protein Virulence vSa¥á Protein 2e-59 67
SACOL0473 YP_185363.1 superantigen-like protein Virulence vSa¥á Protein 4e-61 67
set9nm YP_001331430.1 superantigen-like protein Virulence vSa¥á Protein 4e-61 67
SAUSA300_0403 YP_493117.1 superantigen-like protein Virulence vSa¥á Protein 4e-61 67
SAKOR_00412 YP_008490596.1 Exotoxin Virulence vSa¥á Protein 1e-61 67
set13 NP_370952.1 superantigen-like protein Virulence vSa¥á Protein 1e-61 66
set13 NP_373639.1 superantigen-like protein Virulence vSa¥á Protein 1e-61 66
set7nm YP_001331428.1 superantigen-like protein 7 Virulence vSa¥á Protein 7e-44 54
SAUSA300_0401 YP_493115.1 superantigen-like protein 7 Virulence vSa¥á Protein 7e-44 54
set11 NP_370950.1 superantigen-like protein 7 Virulence vSa¥á Protein 1e-35 52
set11 NP_373637.1 superantigen-like protein 7 Virulence vSa¥á Protein 1e-35 52
SAS0390 YP_042515.1 superantigen-like protein 7 Virulence vSa¥á Protein 4e-41 51
set22 NP_645205.1 superantigen-like protein 7 Virulence vSa¥á Protein 4e-41 51
SAMSHR1132_03760 YP_005324898.1 exotoxin 1 Virulence vSa¥á Protein 2e-42 51
SAKOR_00410 YP_008490594.1 Exotoxin Virulence vSa¥á Protein 3e-43 51
set1 YP_039880.1 superantigen-like protein 7 Virulence vSa¥á Protein 3e-43 50
set4 YP_039882.1 superantigen-like protein Virulence vSa¥á Protein 5e-22 45
SAMSHR1132_03770 YP_005324899.1 exotoxin 4 Virulence vSa¥á Protein 9e-19 45
set10nm YP_001331431.1 superantigen-like protein Virulence vSa¥á Protein 3e-21 42
SAUSA300_0404 YP_493118.1 superantigen-like protein Virulence vSa¥á Protein 3e-21 42
SAS0393 YP_042518.1 superantigen-like protein Virulence vSa¥á Protein 1e-20 42
set25 NP_645208.1 superantigen-like protein Virulence vSa¥á Protein 1e-20 42
SACOL0474 YP_185364.1 superantigen-like protein Virulence vSa¥á Protein 3e-21 42
set14 NP_370953.1 superantigen-like protein Virulence vSa¥á Protein 3e-21 42
set14 NP_373640.1 superantigen-like protein Virulence vSa¥á Protein 3e-21 42
SAKOR_00413 YP_008490597.1 Exotoxin Virulence vSa¥á Protein 2e-20 42