|
Name : lysS (Nmul_A2275) Accession : YP_412959.1 Strain : Nitrosospira multiformis ATCC 25196 Genome accession: NC_007614 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 2586860 - 2588383 bp Length : 1524 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGATGAGGCTTTAGAGAAAGATTCGGAGGAAACGAATCGGTTTCAGGCAGAGATCAGGCTCGTCGAGGAGCGGCGAGC AAAACTGGATGCGCTGCGTGCAACGGGCAATGCCTTTCCCAATGACTTTCCCCGCGAACATTTTTCGGCGGACCTTCATA ACACGTATAGCGAACACTCCACCGAAACACTGGAGGCAGAACCGGTACCCGTGCGCGTGGCTGGCCGGATGGTCCTCAAG CGGGTCATGGGCAAGGCAAGCTTTGCCACCCTGCAGGATATGCGCGGTCGCATCCAGCTTTACATTGCAAAGGATGTAGC GGGCGACAGCGCTTATGGCGCATTCAGGCATTATGATCTTGGGGACATATTGGGTGCGGAGGGTACACTGTTTCGGACCC GCACCGGGGAGTTGTCGGTACGGGTGACAAACCTGAGATTGCTCACGAAATCGCTGCGCCCACTGCCGGAAAAATTTCAT GGTCTGAGCGACCAGGAGCAGAAGTACCGCCAGCGCTATCTCGACCTCATCACGAATGAAAGCAGTCGCAAGGTGTTTAT CGCGCGCTCCAGGATCATCCAGGCCATCCGCGAATTTCTGGTCGGGCATGGCTATCTGGAAGTCGAAACGCCCATGATGC ATCCTATCCCGGGGGGGGCGGCTGCACGCCCTTTCATCACGCATCACAACGCGCTGGACATGCAGTTGTATCTGCGTATC GCACCCGAGCTTTATCTCAAGCGTCTGGTAATAGGCGGATTGGAAAAAGTATTCGAAATAAACCGCAGCTTCAGGAATGA GGGGATTTCCACTCGGCATAACCCCGAATTCACGATGCTGGAGTTTTACGAGGCCTACCGGGACTATGCGTATCTGATGG ATCTTACCGAAGCTCTGTTGCGGGAAGTAACGCTAAAGGTGCTGGGCGCTGCCAGCTTCACGTATCAGGAGCGCGAGCTG GATCTGGCCCAGCCCTTCGCGCGCCTGACCATCACCGAGGCTATCCGGAAATTTCATCCCGAATATACGGAGGCGCAGCT CGACGATCGTGCATTCCTGATCGACAAGTTGCAGGAACTCGGAATTCCTTATAAACCCGGGGACGGCGTAGGCGGATTAC AGCTTACCCTGTTTGATGAAACTACCGAGCATCTGCTGTTCGACCCTACCTTCATTGTCGATTATCCGGCGGAAGTCTCG CCGCTTGCGCGTCGCAACGACAGGAATCCGGCAATAACCGACCGGTTTGAGCTCTATATAGCCGGGCGTGAGATTGCAAA CGGATTCTCAGAGCTGAATGATCCGGAGGATCAGGCGGTGCGCTTCCTGGAGCAGGCAAGAGCCAAGGAAGCAGGCGATG CGGAAGCCATGCACTACGATGCCGATTATATCCGCGCCCTCGAATATGGCCTGCCTCCCACCGCCGGGGAAGGCATCGGC ATCGATCGGCTGGTCATGCTCCTGACCAATAGCCCGAGTATCCGCGATGTCATTCTGTTCCCCCAATTGCGGCGGGAGGA TTGA Protein sequence : MDEALEKDSEETNRFQAEIRLVEERRAKLDALRATGNAFPNDFPREHFSADLHNTYSEHSTETLEAEPVPVRVAGRMVLK RVMGKASFATLQDMRGRIQLYIAKDVAGDSAYGAFRHYDLGDILGAEGTLFRTRTGELSVRVTNLRLLTKSLRPLPEKFH GLSDQEQKYRQRYLDLITNESSRKVFIARSRIIQAIREFLVGHGYLEVETPMMHPIPGGAAARPFITHHNALDMQLYLRI APELYLKRLVIGGLEKVFEINRSFRNEGISTRHNPEFTMLEFYEAYRDYAYLMDLTEALLREVTLKVLGAASFTYQEREL DLAQPFARLTITEAIRKFHPEYTEAQLDDRAFLIDKLQELGIPYKPGDGVGGLQLTLFDETTEHLLFDPTFIVDYPAEVS PLARRNDRNPAITDRFELYIAGREIANGFSELNDPEDQAVRFLEQARAKEAGDAEAMHYDADYIRALEYGLPPTAGEGIG IDRLVMLLTNSPSIRDVILFPQLRRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-133 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_412959.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 8e-134 | 57 |
