Gene Information

Name : SBO_0936 (SBO_0936)
Accession : YP_407427.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 963668 - 964387 bp
Length : 720 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
GTGGTCACACTCTGCCAAGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGG
CAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCATGGTTCGGCCGGAGCAAGAAGCATCGCCA
CAATGGCAACCCGGAGAGGCTACCAGATGGGACGCTGGCTTGCTGGCAGGCTCATGAAAGAGCTGGGGCTGGTCAGCTGT
CAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGT
GACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTGTATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTC
TCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAA
ATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAGTT
CCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATAAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGAAC
GCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCAGGTAA

Protein sequence :
MVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSC
QQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE
MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSISRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 7e-78 89
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 7e-78 89
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-78 66
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-78 66
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-78 66
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-78 66
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-78 66
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-78 66
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-78 66
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-78 66
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-53 64
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-53 64
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-54 63
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-54 63
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 4e-56 62
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-53 61
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-53 61
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 6e-54 55
tnpB CAB61574.1 transposase B Not tested HPI Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_0936 YP_407427.1 IS911 ORF2 VFG1484 Protein 4e-78 89
SBO_0936 YP_407427.1 IS911 ORF2 VFG1122 Protein 8e-79 66
SBO_0936 YP_407427.1 IS911 ORF2 VFG0785 Protein 7e-55 63