Gene Information

Name : SBO_0632 (SBO_0632)
Accession : YP_407140.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS629 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 648196 - 649083 bp
Length : 888 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
ATGCCACTGCTGGATAAGCTGCGTAAGCTGTACGGGGTCGGACCGGTATGCAGTGAACTACATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCATCCTGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACTGCGCGTATACGATGGGAATCATCAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATTATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCTCTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAATAATCGACG
ATTGCTGGAAAGGCTGGGCCACATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MPLLDKLRKLYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEILRVYDGNHQVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-93 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 5e-93 98
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-132 98
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-132 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-107 98
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-132 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-132 97
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-132 97
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-98 97
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 8e-128 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-130 96
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-129 96
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-129 96
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-129 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-129 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-129 96
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-131 95
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-131 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-129 95
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-129 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-127 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-50 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_0632 YP_407140.1 IS629 ORF2 VFG1602 Protein 1e-127 93