Gene Information

Name : fimC (SBO_4366)
Accession : YP_410610.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Virulence
Product : periplasmic chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4418085 - 4418810 bp
Length : 726 bp
Strand : +
Note : required for type 1 fimbriae; Code: NU; COG: COG3121

DNA sequence : 
GTGAGTAATAAAAACGCCAATGTAAGGAAATCGCAGGAAATAACATTCTGCTTGCTGGCAGGTATCCTGATGTTCATGGC
AATGATGGTTGCCGGACGCGCTGAAGCGGGAGTGGCCTTAGGTGCGACTCGCGTAATTTATCCGGCAGGGCAAAAACAAG
TGCAACTTGCCGTGACAAATAATGATGAAAATAGTACCTATTTAATTCAATCATGGATGGAAAATGCCGATGGTGTAAAG
GATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTGCGTATTCTTGATGCAAC
AAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAATGTTAAAGCGATTCCGTCAATGGATAAATCAAAAT
TGACTGAGAATACGCTACAGTTCGCAATTATCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCC
GATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTATCTGAC
GGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCACGGTTAAATTGC
CTTCTGATGCAGGAAGCAATATTACTTACCGAACAATAAATGATTATGGCGCACTTACCCCCAAAATGACGGGCGTAATG
GAATAA

Protein sequence : 
MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQVQLAVTNNDENSTYLIQSWMENADGVK
DGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQFAIISRIKLYYRPAKLALPP
DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-83 84
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 7e-71 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_410610.1 periplasmic chaperone VFG0875 Protein 6e-109 98
fimC YP_410610.1 periplasmic chaperone VFG1644 Protein 4e-71 67
fimC YP_410610.1 periplasmic chaperone VFG0911 Protein 3e-71 67
fimC YP_410610.1 periplasmic chaperone VFG0445 Protein 2e-52 48