Gene Information

Name : SBO_4324 (SBO_4324)
Accession : YP_410568.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4373153 - 4374175 bp
Length : 1023 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence : 
GTGGTCACACTCTGCCAAGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGG
CAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCATGGTTCGGCCGGAGCAAGAAGCATCGCCA
CAATGGCAACCCGGAGAGGCTACCAGATGGGACGCTGGCTTGCTGGCAGGCTCATGAAAGAGCTGGGGCTGGTCAGCTGT
CAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGT
GACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTGTATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTC
TCGACCTGTTCGCAATAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAA
ATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAGTT
CCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGAAC
GCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCATAACG
GACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAACGGTGGGTTACCCCCAAACGAATCGGAAAATCG
ATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTTGTTGACCACTTCACGCTCCATCGCTGCCCGGCCTTTGTGGATGG
TTTCACCAAACTCCAGTAACGTCCCGTGCAGGGCATTAATTTGTGCGGTCCGGAACTTCACCAGTTGCATGCGGGTACGG
TGCAGAACCAGTACCGACTGCTGTTCTTCTGTTTTTACGGCGATTTCTTTACCCGGCTGCTGA

Protein sequence : 
MVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSC
QQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFAIKPVGWAMSFSPDSRLTMKALE
MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAIT
DYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFLLTTSRSIAARPLWMVSPNSSNVPCRALICAVRNFTSCMRVR
CRTSTDCCSSVFTAISLPGC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-93 66
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-93 66
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-93 66
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-93 66
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-93 66
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 5e-93 66
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-93 66
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 7e-93 66
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 3e-61 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_4324 YP_410568.1 IS911 ORF2 VFG1122 Protein 3e-93 66