Gene Information

Name : SBO_4155 (SBO_4155)
Accession : YP_410410.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : protein in IS element
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4204259 - 4205164 bp
Length : 906 bp
Strand : +
Note : Code: L; COG: COG3436

DNA sequence :
ATGATCTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGGCGGTTCAGTATGACGTCCTGCGCCAGTA
TGTGCTGATGCCCGGTAAAGTTCATGCGGATGATATCCCCGTTCCGGTCCAGGAGCCGGGCAGTGGTAAAACAAGAACTG
CCCGGCTGTGGGTCTATGTCCGTGATGACCGTAACGCCGGTTCACAGATGCCCCCGGCGGTCTGGTTCGCGTACAGCCCG
GACCGGAAAGGTATCCATCCACAGAATCACCTGGCTGGTTACAGCGGTGTGCTTCAGGCAGATGCTTACGGTGGTTACCG
GGCGTTATACGAATCCGGCAGAATAACGGAAGCCGCGTGTATGGCCCATGCCCGGAGAAAAATCCACGATGTGCATGCAA
GAGTGCCAACCGACATCACCACGGAAGCCCTGCAGCGTATCGGTGAACTGTATACCATCGAGGCAGAAGTCCGGGGATGT
TCAGCAGAACAGCGTCTGGCGGCAAGAAAAGCAAGAGCCGCGCCACTGATGCAGTCACTGTATGACCGGATACAGCAACA
GATGAAAACACTGTCGCGTCACTCGGATACGGCAAAAGCGTTCGCATACCTACTGAAACAGTGGAAGGCCCTGAACGTGT
ACTGCAGTAATGGCTGGGTGGAAATCGACAACAACATCGCAGAGAACGCCTTACGGGGAGTGGCCGTAGGCCGGAAAAAC
TGGCTCTTCGCGGGTTCCGACAGCGGTGGCGAACATGCGGTGGTGTTGTACTCGCTGATCGGCACATGCCGTCTGAACAA
TGTAGAGCCAGAAAAATGGCTGCGTTACGTTATTGAGCATCTCCAGGACTGGCCGGCAAACCGGGTACGCGATCTGTTGC
CCTGGAATGAGGTGTACTGGCAATAG

Protein sequence :
MIWQPEFTDKTLSRKPGAVQYDVLRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSP
DRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVRGC
SAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCSNGWVEIDNNIAENALRGVAVGRKN
WLFAGSDSGGEHAVVLYSLIGTCRLNNVEPEKWLRYVIEHLQDWPANRVRDLLPWNEVYWQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2972 NP_708746.1 hypothetical protein Not tested SHI-1 Protein 1e-110 88
unnamed AAK00463.1 unknown Not tested SHI-1 Protein 1e-110 88
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 9e-84 69
unnamed AAL67373.1 unknown Not tested PAI II CFT073 Protein 3e-46 53
unnamed AAL67335.1 L0015-like protein Not tested PAI II CFT073 Protein 7e-47 53
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_4155 YP_410410.1 protein in IS element VFG0634 Protein 4e-111 88
SBO_4155 YP_410410.1 protein in IS element VFG1700 Protein 4e-84 69