Gene Information

Name : gspK (SBO_3019)
Accession : YP_409355.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Virulence
Product : type II secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3156
EC number : -
Position : 3018827 - 3019738 bp
Length : 912 bp
Strand : +
Note : Code: U; COG: COG3156

DNA sequence : 
ATGCTGGTAACCATCACGCTTTCCGGGCGAATGCAGCAACAACTTGGGCGAACGCGCAGCCAGCAGGAGTACCAGCAGGC
GCTGTGGTACAGCGCCAGTGCGGAAAGCCTGGCGCTGAGCGCGCTCAGTCTGAGCCTGAAAAATGAAAAGCGCGTGCATC
TGGCACAGCCGTGGGCATCCGGCCCTCGTTTCTTCCCTCTGCCGCAGGGGCAAATTGCGGTCACCCTGCGTGACGCACAG
GCTTGCTTTAACCTGAATGCCCTTGCTCAGCCGACAACGGCGTCGCGTCCGCTTGCGGTACAACAGTTGATTGCCCTGAT
CTCGCGCCTGGATGTGCCTGCTTATCGGGCCGAACTGATAGCCGAAAGCCTGTGGGAGTTTATTGACGAGGACCGCAGCG
TGCAGACACGTCTGGGCCGTGAAGACAGCGAGTATCTCGCCCGTTCGGTGCCGTTCTACGCCGCCAATCAACCGCTGGCT
GATATCAGTGAGATGCGCGTGGTACAGGGAATGGACGCCGGGCTTTATCAAAAACTGAAACCGCTGGTCTGTGCGCTGCC
GATGATCCGCCAGCAAATCAACATCAATACTTTAGACGTCACGCAAAGTGTGATTCTTGAGGCGCTGTTTGACCCGTGGT
TAAGCCCCGTTCAGGCGCGGGCGTTATTACAACAACGTCCGGCGAAGGGCTGGGAAGATGTCGATCAGTTTCTTGCACAG
CCGCTACTTGCTGACGTCGATGAGCGTACTAAAAAACAGCTAAAAACCGTCCTGAGCGTGGACAGCAATTACTTCTGGCT
GCGTTCAGATATCACCGTGAATGAGATTGAACTGACGATGAACTCGTTAATTGTCCGCATGGGCCCACAACACTTTTCGG
TTCTCTGGCATCAGACAGGAGAAAGTGAGTGA

Protein sequence : 
MLVTITLSGRMQQQLGRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLA
DISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININTLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQ
PLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspK YP_854400.1 type II secretion protein GspK Not tested PAI I APEC-O1 Protein 6e-124 99
gspK CAE85227.1 GspK, hypothetical type II secretion protein Not tested PAI V 536 Protein 8e-124 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspK YP_409355.1 type II secretion protein VFG2054 Protein 1e-123 99