Gene Information

Name : gspF (SBO_3014)
Accession : YP_409350.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Virulence
Product : type II secretion protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 3015532 - 3016755 bp
Length : 1224 bp
Strand : +
Note : Code: NU; COG: COG1459

DNA sequence : 
ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGCATGATTGAGGCGGATTCCGCGCGTCA
TGCCCGCCAGTTGTTGCGCGGTAAAGAGCTTATCCCCGTGCACATTGAAGCCAGGATGAATGCATCGGCAGGGGGAATGT
TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGGCGGCAGATCTGGCGCTGTTCACGCGCCAACTGGCAACGCTGGTG
CAGGCAGCAATGCCGTTGGAAACCTGCTTGCAGGCGGTCAGTGAGCAAAGTGAAAAACTGCATGTGAAGAGCCTCGGAAT
GGCGCTGCGCAGCCGGATTCAGGAAGGTTATACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGATTCCCTGT
TTTGTTCGATGGTCGCTGCCGGAGAAAAATCCGGGCATCTCGACGTGGTGCTCAATCGCCTGGCAGATTACACCGAACAG
CGACAGCGCCTGAAATCACGTCTATTGCAGGCCATGCTCTATCCGCTGGTTATGCTGGTGGTGGCAACGGGCGTGGTCAC
TATTTTGCTGACGGCAGTGGTGCCGAAAATCATCGAACAGTTTGATCATCTCGGACACGCGCTACCCTCCTCCACCCGTG
CGCTTATCGCTATGAGTGATGCGTTACAGGCCAGCGGCGTTTACTGGCTGGCGGGATTGCTGGCGCTTCTGGTGCTGGGG
CAATGGCTACTTAAAAATCCTACTATGCGCCTGCGCTGGGATAAAACCTTGCTGCGTCTGCCCGTGACGGGCCGTGTTGC
GCGCGGGCTGAATACGGCGCGTTTTTCCCGCACATTAAGCATCCTCACCGCCAGCAGTGTTCCGCTACTGGAAGGCATTC
AGACCGCTGCCGCCGTGTCGGCAAATCGCTATGTCGAACAACAACTGCTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC
AGTCTGCGCGCCGCGCTGGCGGAGTTGCGCCTGTTCCCGCCGATGATGCTGTACATTATCGCTTCCGGCGAACAGAGCGG
CGAACTGGAAACCATGCTTGAGCAGGCCGCTGTTAACCAGGAACGGGAATTTGATACCCAGGTGGGGCTGGCGTTGGGGC
TGTTTGAGCCTGCGCTGGTGGTGATGATGGCGGGCGTGGTGCTGTTTATTGTCATCGCCATCCTCGAGCCGATGCTGCAA
CTGAATAATATGGTTGGAATGTAA

Protein sequence : 
MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNASAGGMLQRRRHAHRRVAAADLALFTRQLATLV
QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAMSDALQASGVYWLAGLLALLVLG
QWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS
SLRAALAELRLFPPMMLYIIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ
LNNMVGM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 5e-163 98
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-162 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspF YP_409350.1 type II secretion protein VFG2049 Protein 4e-156 97
gspF YP_409350.1 type II secretion protein VFG0181 Protein 6e-76 46
gspF YP_409350.1 type II secretion protein VFG1870 Protein 1e-66 41