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Name : gspD (SBO_3012) Accession : - Strain : Shigella boydii Sb227 Genome accession: NC_007613 Putative virulence/resistance : Unknown Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 3011980 - 3014040 bp Length : 2061 bp Strand : + Note : SBO3012; contains in-frame stop codon; original product: type II secretion protein DNA sequence : GTGTTTTGGCGTGATATTACGTTGTCGGTCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCT GGTGCTGGCAGCGGCATTATGCAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACC TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTACAGGGGAAAGTGAGT ATTCGCACCATGACCCCGCTCAATGAACGCCAGTATTACCAGCTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCCGT CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCCAGCGCTGCGAAAGTCGAGCCGCTGCCGCTGGTCGGTGAAG GCAGCGACAACTACGCGGGCGATGAAATGGTCACCAAAGTAGTGCCGGTACGTAATGTGTCGGTACGCGAGCTGGCACCG ATTCTGCGCCAGATGATCGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGCTCCCTCCAACGTGATTATGCTCACCGG ACGCGCCTCCGTTGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCACGCGGGTAATCGCACCGAAGAGGTGATCC CGCTGGATAACGCCTCGGCTTCGGAAATCGCCCGCGTGCTGGAAAGCCTGACGAAAAACAGCGGCGAGAACCAGCCTGCG ACGCTGAAATCTCAAATTGTCGCCGACGAACGCACCAACAGTGTGATTGTCAGTGGTGACCCGGCCACGCGGGACAAAAT GCGCCGCCTGATCCGTCGGCTGGACTCAGAAATGGAACGCAGCGGCAACAGCCAGGTTTTCTATCTCAAATACAGCAAAG CCGAAGATCTGGTCGATGTGCTGAAACAGGTCAGCGGCACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACGGTCGGT AGCGGGCGTGAGGTTGTATCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTAACCGCGCCGCAGGACATCATGCA GTCGCTGCAAAGCGTAATTGAACAACTGGATATTCGCCGTGCTCAGGTGCACGTCGAGGCGTTGATCGTGGAAGTTGCCG AAGGTAGCAATATCAACTTCGGCGTGCAGTGGGCGTCGAAAGATGCCGGATTAATGCAGTTTGCTAATGGTACGCAGATC CCTATCGGTACGCTGGGGGCAGCCATTTCTCAGGCGAAACCGCAGAAAGGCTCGACGGTGATCAGTGAAAACGGCGCTAC CACCATTAATCCGGATACCAACGGCGATCTCTCCACACTCGCCCAGCTTCTTTCTGGATTTAGCGGTACGGCGGTTGGCG TGGTGAAAGGCGACTGGATGGCACTGGTGCAGGCGGTTAAAAACGACTCCAGCTCGAACGTTCTCTCCACGCCGAGCATC ACTACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCTAGGACGTTCCGGTATTAACCGGCTCTACCGTTGGCTCCAA TAACAGCAATCCTTTCAATACAGTAGAAAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGTA ACGCGGTACAGATGGTGATTGAGCAGGAAGTCTCGAAGGTGGAAGGACAGACCAGCCTCGACGTGGTGTTTGGTGAGCGC AAACTGAAAACCACCGTGCTGGCTAACGATGGTGAGCTGATTGTGCTTGGTGGTCTGATGGACGATCAGGCGGGAGAAAG CGTGGCGAAAGTGCCTCTGCTGGGCGATATCCCATTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAAC GTAACCTGATGGTGTTTATCCGCCCGACCATTCTGCATGACGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAAC TATATGCGCGCCGAACAGATCTATCGTGATGAGCAAGGTTTAAGCCTGATGCCGCACACCGCACAGCCGGTACTGCCAGC GCAAAACCAGGCCTTACCGCCGGAAGTTCGCGCGTTCCTCAATGCCGGGAGAACGCGTTAA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | DNA | 0.0 | 96.7 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | DNA | 0.0 | 95.1 |
