Gene Information

Name : SBO_2069 (SBO_2069)
Accession : YP_408476.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS629 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2044657 - 2045544 bp
Length : 888 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
ATGCCACTGCTGGATAAGCTGCGTAAGCTGTACGGGGTCGGACCGGTATGCAGTGAACTACATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCATCCTGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACTGCGCGTATACGATGGGAATCATCAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCGGAAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATTATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCTCTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTA
ATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAATAATCGACG
ATTGCTGGAAAGGCTGGGCCACATCCCTCCGGCAGAAGCAGAAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGG
CAGCCTGA

Protein sequence :
MPLLDKLRKLYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEILRVYDGNHQVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTISGKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-92 99
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-92 98
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-132 98
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-106 98
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-131 97
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-131 97
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-131 97
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 4e-127 96
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-128 96
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-128 96
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-128 96
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-128 96
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-131 96
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-97 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-128 95
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 9e-129 95
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-129 95
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-130 95
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-130 95
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-128 95
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-126 93
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-50 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_2069 YP_408476.1 IS629 ORF2 VFG1602 Protein 1e-126 93