Gene Information

Name : SBO_1268 (SBO_1268)
Accession : YP_407724.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1260499 - 1260786 bp
Length : 288 bp
Strand : -
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAAACCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGA

Protein sequence : 
MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKQQRILHRSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-33 100
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 8e-34 100
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 1e-33 99
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 1e-33 99
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 2e-33 99
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 2e-33 99
unnamed AAF09021.1 unknown Not tested SHI-O Protein 4e-33 98
unnamed AAF09029.1 unknown Not tested SHI-O Protein 4e-33 98
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 3e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_1268 YP_407724.1 IS600 ORF1 VFG1707 Protein 3e-34 100