Gene Information

Name : SBO_1259 (SBO_1259)
Accession : YP_407715.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : ISSfl4 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1255391 - 1255729 bp
Length : 339 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGGAACAGAAAGCATTATCTGCAGAACCCCGCAGATCATTTTCAAATGAGTTTAAACTTCAAATGGTTAAACTGGCTTC
ACAACCAGGAGCCTCTGTTGCCCGTATTGCCCGGGAACACGATATCAATGATAACCTGCTGTTCAAATGGCTCAGGCTCT
GGCAGAACGAAGGGCGCATATCGCGGCGTCTTCCGGTAACAACCTCTTCTGACACTGGCGTTGAATTATTACCTGTGGAG
ATAACGCCGGATGAGCCGAAAGAACCTGTGGCTGCTCTTACTCCGTCTTTATCTACTCAGACTACAGTTAGTGCCAGCTC
CTGCAAGGTGGAGTTCTGA

Protein sequence : 
MEQKALSAEPRRSFSNEFKLQMVKLASQPGASVARIAREHDINDNLLFKWLRLWQNEGRISRRLPVTTSSDTGVELLPVE
ITPDEPKEPVAALTPSLSTQTTVSASSCKVEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1159 NP_286694.1 hypothetical protein Not tested TAI Protein 1e-41 90
Z1598 NP_287102.1 hypothetical protein Not tested TAI Protein 1e-41 90
unnamed CAD66191.1 hypothetical protein Not tested PAI III 536 Protein 8e-39 86
Z1208 NP_286743.1 hypothetical protein Not tested TAI Protein 9e-39 84
Z1648 NP_287151.1 hypothetical protein Not tested TAI Protein 4e-38 83
ORF7 AAK27334.1 unknown Not tested PAI-I AL862 Protein 3e-28 82
ECO103_3566 YP_003223429.1 hypothetical protein Not tested LEE Protein 9e-36 78
unnamed CAD66197.1 hypothetical protein Not tested PAI III 536 Protein 2e-28 77
ECUMN_3365 YP_002414038.1 putative transposase Not tested Not named Protein 2e-20 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_1259 YP_407715.1 ISSfl4 ORF1 VFG1666 Protein 3e-39 86
SBO_1259 YP_407715.1 ISSfl4 ORF1 VFG1672 Protein 9e-29 77
SBO_1259 YP_407715.1 ISSfl4 ORF1 VFG1738 Protein 5e-21 50