Gene Information

Name : SBO_1257 (SBO_1257)
Accession : YP_407713.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1253707 - 1253994 bp
Length : 288 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAAACCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCTTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGA

Protein sequence : 
MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLLEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKQQRILHRSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-32 99
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 1e-32 99
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-32 98
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-32 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 3e-32 98
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 3e-32 98
unnamed AAF09021.1 unknown Not tested SHI-O Protein 6e-32 97
unnamed AAF09029.1 unknown Not tested SHI-O Protein 6e-32 97
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 1e-07 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_1257 YP_407713.1 IS600 ORF1 VFG1707 Protein 5e-33 99