Gene Information

Name : SBO_1043 (SBO_1043)
Accession : YP_407524.1
Strain : Shigella boydii Sb227
Genome accession: NC_007613
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1059209 - 1059865 bp
Length : 657 bp
Strand : +
Note : Code: L; COG: COG2801

DNA sequence : 
GTGGTCACACTCTGCCAAGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGG
CAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCATGGTTCGGCCGGAGCAAGAAGCATCGCCA
CAATGGCAACCCGGAGAGGCTACCAGATGGGACGCTGGCTTGCTGGCAGGCTCATGAAAGAGCTGGGGCTGGTCAGCTGT
CAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGT
GACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTGTATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTC
TCGACCTGTTCGCAATAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAA
ATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGAGCAGGGCAGTCATTATACGAGCAGGCAGTT
CCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCAATGGAACG
CTTCTTCAGGAGTCTGA

Protein sequence : 
MVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSC
QQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFAIKPVGWAMSFSPDSRLTMKALE
MAWETRGKPGGVMFHSEQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSQWNASSGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-67 65
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-67 65
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-67 65
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-67 65
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-67 65
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 3e-67 65
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-67 65
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 5e-67 65
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-45 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_1043 YP_407524.1 IS911 ORF2 VFG1122 Protein 2e-67 65