Gene Information

Name : SBO_P057 (SBO_P057)
Accession : YP_406281.1
Strain :
Genome accession: NC_007608
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 41824 - 42663 bp
Length : 840 bp
Strand : +
Note : -

DNA sequence :
GTGGTCACACTCTGCCAAGTGTTCGGGGTTCATCGCAGCAGCTACAGATACTGGAAAAACCGTCCTGAAAAACCAGACGG
CAGACGGGCTGTATTACGCAGTCAGGTACTTGAGCTACATGGCATCAGCCATGGTTCGGCCGGAGCAAGAAGCATCGCCA
CAATGGCAACCCGGAGAGGCTACCAGATGGGACGCTGGCTTGCTGGCAGGCTCATGAAAGAGCTGGGGCTGGTCAGCTGT
CAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGT
GACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTGTATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTC
TCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAA
ATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAGTT
CCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGAAC
GCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCATAACG
GACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAACGGTGGGTTACCCCCAAACGAATCGGAAAATCG
ATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTGTTGA

Protein sequence :
MVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSC
QQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE
MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAIT
DYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 3e-97 89
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 3e-97 89
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-93 67
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-93 67
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-93 67
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-93 67
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-93 67
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-93 67
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-93 67
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-93 67
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-64 63
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 3e-64 63
unnamed CAI43898.1 putative transposase Not tested LEE Protein 7e-65 62
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 7e-65 62
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-65 62
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 2e-65 62
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 7e-68 62
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 2e-61 54
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_P057 YP_406281.1 IS911 ORF2 VFG1484 Protein 2e-97 89
SBO_P057 YP_406281.1 IS911 ORF2 VFG1122 Protein 6e-94 67
SBO_P057 YP_406281.1 IS911 ORF2 VFG0785 Protein 1e-65 62