Gene Information

Name : SBO_P040 (SBO_P040)
Accession : YP_406264.1
Strain :
Genome accession: NC_007608
Putative virulence/resistance : Unknown
Product : transposase/IS protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 28328 - 29110 bp
Length : 783 bp
Strand : +
Note : -

DNA sequence :
ATGATCTGGCAGCCTGAGTTCACAGATAAAACACTCTCCAGGAAACCCGGGGCGGTTCAAAGCCTTATAAGCGCAGCGCC
TGCGCTGTCACAACAGGCAGTAGACCAGGAATGGAGTTATATGGACTTCCTGGAGCATCTGCTTCATGAAGAAAAACTGG
CACGTCATCAACGTAAACAGGCGATGTATACCCGAATGGCAGCCTTCCCGGCGGTGAAAACGTTCGAAGAGTATGACTTC
ACATTCGCCACCGGAGCACCGCAGAAGCAACTCCAGTCGTTACGCTCACTCAGCTTCATAGAACGTAATGAAAATATCGT
ATTACTGGGGCCATCAGGTGTGGGGAAAACCCATCTGGCAATCGCGATGGGCTATGAAGCAGTCCGTGCAGGTATCCAAG
TTCGCTTCACAACAGCAGCAGATCTGTTACTTCAGTTATCTACGGCACAACGTCAGGGCCGTTATAAAACGACGCTTCAG
CGTGGAGTAATGGCCCCCCGCCTGCTCATCATTGATGAAATAGGCTATCTGCCGTTCAGTCAGAAAGAAGCAAAACTGTT
CTTCCAGGTCATCGCTAAACGTTATGAAAAGAGCGCAATGATCCTGACATCCAATCTACCGTTCGGGCAGTGGGATCAAA
CGTTCGCCGGTGATGCAGCACTGACCTCAGCGATGCTGGGCCGTATCTTACACCACTCACATGTCGTTCAAATCAAAGGA
GAAAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAA

Protein sequence :
MIWQPEFTDKTLSRKPGAVQSLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDF
TFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIQVRFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQKEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKG
ESYRLRQKRKAGVIAEANPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 2e-84 99
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 2e-109 98
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 3e-110 98
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 3e-110 98
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 3e-110 98
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 4e-110 98
unnamed CAA21402.1 - Not tested HPI Protein 4e-110 98
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 3e-110 98
api84 CAF28558.1 putative transposase Not tested YAPI Protein 3e-110 98
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-110 98
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 3e-110 98
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 3e-110 98
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 2e-110 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_P040 YP_406264.1 transposase/IS protein VFG1460 Protein 1e-84 99
SBO_P040 YP_406264.1 transposase/IS protein VFG1515 Protein 2e-110 98
SBO_P040 YP_406264.1 transposase/IS protein VFG1627 Protein 2e-110 98
SBO_P040 YP_406264.1 transposase/IS protein VFG1606 Protein 2e-110 98
SBO_P040 YP_406264.1 transposase/IS protein VFG1663 Protein 1e-109 98