Gene Information

Name : SBO_P109 (SBO_P109)
Accession : YP_406333.1
Strain :
Genome accession: NC_007608
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 90287 - 90913 bp
Length : 627 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCC
TAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTGTATCTGGACGGGTA
AGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGAC
AGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCA
GGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAA
ACTGCTGGGATAACAGCCCAATGGAACGCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGC
TTCAGCGAGGCAGCTCACGCCATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAATGGTGG
GTTACCCCCAAACGAATCGGAAAATCGATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTGTTGA

Protein sequence : 
MKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPD
SRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVS
FSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-89 90
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-89 90
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-77 73
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-77 73
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-77 73
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-77 73
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-77 73
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-77 73
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-77 73
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-77 73
unnamed AAC31485.1 L0006 Not tested LEE Protein 6e-62 63
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 8e-62 63
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-61 63
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-61 63
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 4e-62 63
Z5089 NP_290241.1 transposase Not tested LEE Protein 6e-62 63
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 1e-61 63
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-33 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-32 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_P109 YP_406333.1 IS911 ORF2 VFG1484 Protein 6e-90 90
SBO_P109 YP_406333.1 IS911 ORF2 VFG1122 Protein 5e-78 73
SBO_P109 YP_406333.1 IS911 ORF2 VFG0785 Protein 2e-62 63