Gene Information

Name : SBO_P106 (SBO_P106)
Accession : YP_406330.1
Strain :
Genome accession: NC_007608
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 87885 - 88598 bp
Length : 714 bp
Strand : +
Note : -

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGTAGATAACGGAATTATCGTCGG
TCGTGACAGACTGGCACGTCTTCGTAAGGAGCTGAGGCTGCACTGTAAGCAGAAACGCAAGTTCAGGGCGACCACAAACT
CTGACCACAATCTGCCGGTTACGCCGAATCTGCTGAATCAGAACTTTACGCCCACAGCACCTAATCAGGTCTGGGTCGCA
GATATAACGTATGTTGCCACCCGGGAAGGATGGCTGTATCTCGCCGGCGTCAAAGATGTTTATACGTGCGAAATTGTCGG
TTACGCCATGGGAGAGTGCATGACGAAAGAGTTGACGGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACACCGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTCTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAAAG
CCTGAGCCACTATCGTTTTAAGAGCCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTC
AGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGATAAAATATTATCAGATGACTGCTTAG

Protein sequence :
MAHIRTRETYGTRRLQTELVDNGIIVGRDRLARLRKELRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFTPTAPNQVWVA
DITYVATREGWLYLAGVKDVYTCEIVGYAMGECMTKELTGKALFMALRSQRPPAGLIHHTDRGSQYCAYDYRVIQEQSGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFRIKYYQMTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-103 93
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-103 93
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-103 92
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-103 92
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-103 92
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-103 92
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-103 92
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 3e-103 92
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-102 92
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-44 46
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 46
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-39 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-39 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 8e-39 44
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 6e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBO_P106 YP_406330.1 IS600 ORF2 VFG1706 Protein 1e-103 92
SBO_P106 YP_406330.1 IS600 ORF2 VFG1631 Protein 8e-40 45