Gene Information

Name : SDY_P021 (SDY_P021)
Accession : YP_406022.1
Strain :
Genome accession: NC_007607
Putative virulence/resistance : Unknown
Product : putative IS orf, fragment
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 16115 - 17314 bp
Length : 1200 bp
Strand : +
Note : -

DNA sequence : 
GTGGCGGCTTATGCTTCCGAAATCAACCGGCTGAAGGCGCTGGTTGCGAAACTGCAGCGCATGCAGTTCGGTAAAAGCTC
AGAAAAACTTCGCGCTAAAACCGAACGGCAGATACAGGAAGCACAGGAGCGAATCAGCGCACTTCAGGAAGAAATGGCGG
AAACGCTGGGTGAGCAATATGACCCGGTACTGCCATCTCCCCTGCGCCAGTCTTCAGCCCGTAAACCGTTACCTGCCTCA
CTTCCCCGTGAAACCCGGGTCATCCGTCCGGAAGAGGAATGCTGCCCGGCCTGTGGTGGCGAACTCAGTTCTCTGGGATG
TGATGTGTCAGAGCAACTGGAGCTTATCAGCAGCGCCTTTAAGGTTATCGAAACACAACGTCCGAAACTGGCCTGTTGCC
GGTGTGACCATATCGTGCAGGCACCGGTGCCTTCAAAACCCATTGCACGCAGTTATGCCGGAGCGGGGCTTCTGGCCCAT
GTTGTCGCTGGAAAATATGCAGACTATCTGCCGTTATACCGCCAGTCAGAAATATACCGTCGTCAGGGCGTGGAGCTGAG
CCGTGCCACACTGGGGCGCTGGACAGGTGCTGTTGCTGAACTGCTGGAACTGCTGTATGACATCCTGCGCCAGTATGTGC
TGATGCCCGGTAAAGTCCATGCCGATGATATCCCCGTTCCGGTCCAGGAGCCGGGCAGCGGTAAAACAAGGACTGCCCGG
CTGTGGGTCTACGTTCGTGATGACCGTAACGCCGGTTCGGAAATGCCTCCGGCGGTCTGGTTCGCGTACTCACCGGACCG
GAAAGGTATCCATCCACAGAATCATCTGGCCGGTTACAGCGGAGTGCTTCAGGCCGATGCTTACGGTGGTTACCGGGCGT
TGTACGAATCCGGCAGAATAACGGAAGCCGCATGTATGGCTCATGTCCGGAGAAAAATCCACGATGTGCATGCAAGAGTG
CCAACCGACATCACCACAGAAGCCCTGCAGCGTATCGGTGAACTGTATGCCATCGAGGCAGAAGTCCGGGGATGTTCAGC
AGAACAGCGTCTGGCGGCAAGAAAAGCCAGAGCCGCGCCACTGATGCAGTCACTGTATGACTGGATACAGCAACAGATGA
AAATTCATTCGCTGAAAATGGAATGTCTCCACGGAGAACACTATTATCCATCGGGAAATAGTGCGGGCAACAGTGTTTAG

Protein sequence : 
MAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVLPSPLRQSSARKPLPAS
LPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAH
VVAGKYADYLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLELLYDILRQYVLMPGKVHADDIPVPVQEPGSGKTRTAR
LWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACMAHVRRKIHDVHARV
PTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKARAAPLMQSLYDWIQQQMKIHSLKMECLHGEHYYPSGNSAGNSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 1e-147 97
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 1e-120 95
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 6e-107 65
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-107 65
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 2e-77 59
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-82 59
tnp AEA34686.1 transposase Not tested Not named Protein 7e-87 59
unnamed AAL08460.1 unknown Not tested SRL Protein 1e-84 58
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 5e-85 58
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 5e-85 58
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 9e-86 58
unnamed AAC31494.1 L0015 Not tested LEE Protein 7e-86 58
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 9e-86 58
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 7e-86 58
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 8e-86 58
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 6e-86 58
unnamed AAL57570.1 unknown Not tested LEE Protein 7e-86 58
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-86 58
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-70 54
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-81 51
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 6e-66 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_P021 YP_406022.1 putative IS orf, fragment VFG1513 Protein 6e-121 95
SDY_P021 YP_406022.1 putative IS orf, fragment VFG1516 Protein 9e-78 59
SDY_P021 YP_406022.1 putative IS orf, fragment VFG1051 Protein 6e-85 58
SDY_P021 YP_406022.1 putative IS orf, fragment VFG0793 Protein 4e-86 58
SDY_P021 YP_406022.1 putative IS orf, fragment VFG1736 Protein 5e-72 54