Gene Information

Name : ipaB (SDY_P166)
Accession : YP_406167.1
Strain :
Genome accession: NC_007607
Putative virulence/resistance : Virulence
Product : IpaB
Function : -
COG functional category : S : Function unknown
COG ID : COG2433
EC number : -
Position : 133340 - 135082 bp
Length : 1743 bp
Strand : -
Note : secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells

DNA sequence :
ATGCATAATGTAAGCACCACAAACACTGGTTTGCCTCTTGCCAAAATATTGGCTTCCACTGAGCTTGGAGACAATACTAT
CCAGGCTGCAAATGATGCAGCTAACAAATTATTTTCTCTTACAATTGCTGATCTTACTGCTAACAATAATATTAATACAA
CTAATGCACACTCAACTTCAAATATATTAATCCCTGAACTTAAAGCACCAAAGTCATTAAATGCAAGTTCCCAACTAACG
CTTTTAATTGGAAACCTTATTCAAATACTCGGTGAAAAATCTTTAACTGCATTAACAAATAAAATTACTGCTTGGAAGTC
TCAGCAACAGGCAAGACAGCAAAAAAACCTAGAATTCTCCGATAAAATTAATACTCTTCTATCTGAAACTGAAGGACTAA
CCAGAGACTATGAAAAGCAAATTAATAAACTAAAAAACGCAGATTCTAAAATAAAAGACCTAGAAAATAAAATTAACCAA
ATTCAAACAAGATTATCCGAACTCGCCCCAGATTCACCAGAAAAGAAAAAATTAAGACGGGAAGAAATACAACTCACTAT
CAAAAAAGACGCAGCAGTTAAAGACAGGACATTGATTGAGCAGAAAACCCTGTCAATTCATAGCAAACTTACAGATAAAT
CAATGCAACTCGAAAAAGAAATAGACTCTTTTTCTGCATTTTCAAACACAGCATCTGCTGAACAGCTATCAACCCAGCAG
AAATCATTAACCGGACTTGCCAGTGTTACTCAATTGATGGCAACCTTTATTCAACTAGTTGGAAAAAATAATGAAGAATC
TTTAAAAAATGATCTGGCTCTATTCCAGTCTCTCCAAGAATCAAGAAAAACTGAAATGGAGAGAAAATCTGATGAGTATG
CTGCTGAAGTACGTAAAGCAGAAGAACTCAACAGAGTAATGGGTTGTGTTGGGAAAATACTTGGGGCACTTTTAACTATC
GTTAGTGTTGTTGCAGCAGCTTTTTCTGGAGGATCATCTCTAGCACTGGCAGCTGTTGGTTTAGCTCTTATGGTTACGGA
TGCTATAGTACAAGCAGCGACCGGCAATTCCTTCATGGAACAAGCCCTGAATCCGATCATGAAAGCAGTCATTGAACCCT
TAATCAAACTCCTTTCAGATGCATTTACAAAAATGCTCGAAGGCTTGGGCGTCGACTCGAAAAAAGCCAAAATGATTGGC
TCTATTCTGGGGGCAATCGCAGGCGCTCTTGTCCTAGTTGCAGCAGTCGTTCTCGTAGCCACTGTTGGTAAACAGGCAGC
AGCAAAACTTGCAGAGAATATTGGCAAAATAATAGGTAAAACCCTCACAGACCTTATACCAAAGTTTCTCAAGAATTTTT
CTTCTCAACTGGACGATTTAATCACTAATGCTGTTGCCAGATTAAATAAATTTCTTGGTGCAGCGGGTGATGAAGTAATA
TCCAAACAAATTATTTCCACCCATTTAAACCAAGCAGTTTTATTAGGAGAAAGTGTTAACTCTGCCACACAAGCGGGAGG
AAGTGTCGCTTCTGCTGTTTTCCAGAACAACGCGTCGACAAATCTAGCAGACCTTACATTATCGAAATATCAAGTTGAAC
AACTGTCAAAATATATCAGTGAAGCAATAGAAAAATTCGGCCAATTGCAGGAAGTAATTGCAGATCTATTAGCCTCAATG
TCCAACTCTCAGGCTAATAGAACTGATGTTGCAAAAGCAATTTTGCAACAAACTACTGCTTGA

Protein sequence :
MHNVSTTNTGLPLAKILASTELGDNTIQAANDAANKLFSLTIADLTANNNINTTNAHSTSNILIPELKAPKSLNASSQLT
LLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
IQTRLSELAPDSPEKKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQ
KSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTI
VSVVAAAFSGGSSLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIG
SILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVI
SKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNNASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASM
SNSQANRTDVAKAILQQTTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipB NP_461806.1 translocation machinery component Virulence SPI-1 Protein 2e-64 43
sipB NP_457279.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 2e-64 43
sipB NP_806488.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 2e-64 43
sipB YP_217804.1 cell invasion protein Virulence SPI-1 Protein 1e-65 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ipaB YP_406167.1 IpaB VFG0987 Protein 0.0 99
ipaB YP_406167.1 IpaB VFG0546 Protein 8e-65 43