Gene Information

Name : SDY_P159 (SDY_P159)
Accession : YP_406160.1
Strain :
Genome accession: NC_007607
Putative virulence/resistance : Unknown
Product : IS100 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 123820 - 124746 bp
Length : 927 bp
Strand : -
Note : -

DNA sequence : 
TTGCCAGACTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACGCCGCGACCTGCTGT
TGCTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGG
TAATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGCATTCATTCGTTCTCTCTCGGTT
CCTCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAA
TGGTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCCCGGATACAGCCGAATGTTGTACATCGAATTCACTGACAATATGC
GTTATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAAT
ATGAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAA
GGAGATGGGCTTATCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACA
CCCGTAACAGTTTTTACATCCCACTAATGACTCGACTGCGCCCGATGGGGAGCACTGTCGATGTTGAAACAGCCAACCGC
CACGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCCCGTCCCTGTGATCGCTGGCT
CGAAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCCTGGTGAAAATCTGGTGAGCT
TCGACAACCCCGTTACTTTATTCGTACCCCTTATAATGGGGTGTTAG

Protein sequence : 
MPDSRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSV
PQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDN
MKTVVLQRDAYQTGQHRFHPSLWQFGKEMGLSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGSTVDVETANR
HGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVSFDNPVTLFVPLIMGC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 3e-138 97
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 3e-138 97
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 5e-137 97
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 3e-138 97
y2411 NP_669718.1 transposase Not tested HPI Protein 5e-137 97
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 3e-138 97
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 5e-137 97
unnamed CAA21403.1 - Not tested HPI Protein 5e-137 97
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 4e-137 97
api83 CAF28557.1 transposase Not tested YAPI Protein 4e-137 97
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 6e-138 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_P159 YP_406160.1 IS100 ORF1 VFG1626 Protein 2e-138 97
SDY_P159 YP_406160.1 IS100 ORF1 VFG1607 Protein 2e-138 97
SDY_P159 YP_406160.1 IS100 ORF1 VFG1461 Protein 3e-138 97
SDY_P159 YP_406160.1 IS100 ORF1 VFG1514 Protein 2e-138 97