Gene Information

Name : ybdM (SDY_0533)
Accession : YP_402228.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 520080 - 520583 bp
Length : 504 bp
Strand : -
Note : Code: K; COG: COG1475; orf

DNA sequence : 
ATGGGGGATACTATGCAACAACGATTAACGCAGGATTTAACGCAATTTCTCGCCAGCTTGCCGGAAGATGATCGCATCAA
CGCGATTAATGAAATCCGCATGGCGATCCATCAGGTTAGCCCCTTTCGTGAAGAGCCAGTGGATTGCGTTCTGTGGGTTA
AAAACAGCCAACTTATGCCTAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGAAAAAATCCATT
GAAATAGATGGTTTTACCCAACCCATTGTGGTCACGCATACGGATAAAAATGCCCTGGAAATAGTGGATGGTTTTCACCG
CCATGAAATTGGTAAAGGCTCATCATCATTAAAATTATGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGC
GTAATCAACGCATCGCCGCGACTATTCGTCATAATCGCGCTCGTGGACGCCATCAAATCACCGCCATGTCGGAAATCGTC
CGTGAACTCAGCCAGTTGGGATAG

Protein sequence : 
MGDTMQQRLTQDLTQFLASLPEDDRINAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLKKSI
EIDGFTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLCLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIV
RELSQLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 9e-41 54
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 2e-40 54
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 2e-40 54
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 9e-41 54
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 9e-40 53
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-39 53
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-39 53
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 6e-38 53
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 4e-39 52
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 3e-38 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybdM YP_402228.1 hypothetical protein VFG1505 Protein 2e-39 52