Gene Information

Name : SDY_4592 (SDY_4592)
Accession : YP_405943.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4302375 - 4302866 bp
Length : 492 bp
Strand : +
Note : orf

DNA sequence :
ATGATGAAACTGGCCCTGACACTGGAAGCCGACAGTGTTAACGTACAGGCACTGAATATGGGGCGAATTGTCGTTGACAT
TGATGGTGTTAATCTCGCTGAACTGATTAACATGGTCTGCGATAACGGCTACTCCCTTCGTGTTGTTGATGAATCTGACC
GGACCTCAGCAGACTGCACGCCACCATTTGTTGCCCTTACCGGCATACGCTGCAGTACCGCACATATCACGGAAACGGAC
AACGCCTGGCTGTACTCGCTGTCACACCAGACCAGTGACTTCGGTGAATCAGAATGGATTCATTTTACCGGTACCGGTTA
TCTGTTACGTACCGATGCGTGGTCATACCCGGTTCTGCGGTTTAAGCGCCTGGGGCTGTCAAAAACGTTCCGTCGTCTGG
TCGTCACACTCATCCGGCGTTATGGTGTCAGTCTCATTCATCTGGATGCCAGTGCCGGATATCTGCCGGGTTTACCCACT
TTCGACTGGTAA

Protein sequence :
MMKLALTLEADSVNVQALNMGRIVVDIDGVNLAELINMVCDNGYSLRVVDESDRTSADCTPPFVALTGIRCSTAHITETD
NAWLYSLSHQTSDFGESEWIHFTGTGYLLRTDAWSYPVLRFKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAGYLPGLPT
FDW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAC31487.1 L0008 Not tested LEE Protein 2e-70 97
unnamed ACU09434.1 conserved hypothetical protein Not tested LEE Protein 2e-70 97
Z5092 NP_290243.1 hypothetical protein Not tested LEE Protein 4e-70 97
ECs4540 NP_312567.1 hypothetical protein Not tested LEE Protein 4e-70 97
Z1223 NP_286758.1 hypothetical protein Not tested TAI Protein 5e-69 94
Z1662 NP_287164.1 hypothetical protein Not tested TAI Protein 5e-69 94
unnamed AAL08479.1 unknown Not tested SRL Protein 3e-68 93
unnamed CAD42102.1 hypothetical protein Not tested PAI II 536 Protein 5e-65 91
unnamed CAI43904.1 hypothetical protein Not tested LEE Protein 2e-64 89
c5148 NP_756996.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-62 88
yeeW CAE85205.1 YeeW protein Not tested PAI V 536 Protein 1e-62 88
z5092 CAD33790.1 Z5092 protein Not tested PAI I 536 Protein 8e-64 88
unnamed CAD66208.1 hypothetical protein Not tested PAI III 536 Protein 1e-64 88
unnamed AAL67388.1 L0008-like protein Not tested PAI II CFT073 Protein 1e-52 88
unnamed AAL57574.1 unknown Not tested LEE Protein 2e-57 87
yeeW ADD91698.1 YeeW Not tested PAI-I AL862 Protein 5e-62 87
yeeW CAI43849.1 YeeW protein Not tested LEE Protein 1e-61 84
yeeW AAZ04462.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 4e-59 84
APECO1_3485 YP_854326.1 hypothetical protein Not tested PAI I APEC-O1 Protein 6e-59 84
aec77 AAW51760.1 Aec77 Not tested AGI-3 Protein 2e-59 83
yeeW NP_838488.1 hypothetical protein Not tested SHI-1 Protein 7e-60 83
yeeW NP_708774.1 hypothetical protein Not tested SHI-1 Protein 7e-60 83
ECO103_3593 YP_003223450.1 hypothetical protein Not tested LEE Protein 2e-59 81
unnamed AAK00483.1 unknown Not tested SHI-1 Protein 6e-53 81

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_4592 YP_405943.1 hypothetical protein VFG0787 Protein 1e-70 97
SDY_4592 YP_405943.1 hypothetical protein VFG1070 Protein 1e-68 93
SDY_4592 YP_405943.1 hypothetical protein VFG1621 Protein 2e-65 91
SDY_4592 YP_405943.1 hypothetical protein VFG1531 Protein 3e-64 88
SDY_4592 YP_405943.1 hypothetical protein VFG1683 Protein 5e-65 88
SDY_4592 YP_405943.1 hypothetical protein VFG0664 Protein 2e-60 83