Gene Information

Name : SDY_4589 (SDY_4589)
Accession : YP_405940.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4300128 - 4300601 bp
Length : 474 bp
Strand : +
Note : orf

DNA sequence :
ATGAAAACATTGTCTCAGAACACCACCTCTTCGGCCTGTGCACCGGAGACTGGCCTGCAACAACTGGTTGCCACCATAGT
CCCTGATGAACAGCGCATCAGCTTCTGGCCGCAGCATTTTGGCCTCATTCCACAGTGGGTGACCCTGGAGCCCCGTATCT
TCGGCTGGATGGACCGTCTGTGTGAAGACTACTGCGGTGGTATCTGGAATCTGTACACCCTGAACAACGGTGGCGCATTT
ATGGCCCCTGAACCGGATGACGATAATGACGAAACATGGGTACTGTTCAATGCCATGAACGGTAACCGCGCTGAAATGAG
CCAGGAAGCCGCCGGCATTGCCGCCTGTCTGATGACGTACAGTCATCACGCCTGCCGTACGGAGTGTTATGCCATGACGG
TCCATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATCGACTGA

Protein sequence :
MKTLSQNTTSSACAPETGLQQLVATIVPDEQRISFWPQHFGLIPQWVTLEPRIFGWMDRLCEDYCGGIWNLYTLNNGGAF
MAPEPDDDNDETWVLFNAMNGNRAEMSQEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAI43899.1 hypothetical protein Not tested LEE Protein 3e-70 99
unnamed AAL67346.1 intergenic-region protein Not tested PAI II CFT073 Protein 3e-65 98
S3200 NP_838483.1 hypothetical protein Not tested SHI-1 Protein 2e-64 97
SF2995 NP_708769.2 hypothetical protein Not tested SHI-1 Protein 2e-64 97
ECO103_3588 YP_003223445.1 hypothetical protein Not tested LEE Protein 4e-57 88
ORF_48 AAZ04457.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-58 87
yfjX YP_854322.1 hypothetical protein Not tested PAI I APEC-O1 Protein 4e-58 87
aec72 AAW51755.1 Aec72 Not tested AGI-3 Protein 7e-62 87
c5155 NP_757003.1 hypothetical protein Not tested PAI II CFT073 Protein 4e-58 87
Z1216 NP_286751.1 hypothetical protein Not tested TAI Protein 2e-58 87
Z1656 NP_287159.1 hypothetical protein Not tested TAI Protein 2e-58 87
yfjX ADD91703.1 YfjX Not tested PAI-I AL862 Protein 3e-63 87
unnamed CAI43844.1 hypothetical protein Not tested LEE Protein 6e-64 87
unnamed CAD66202.1 hypothetical protein Not tested PAI III 536 Protein 2e-62 87
yfjX CAE85200.1 YfjX protein Not tested PAI V 536 Protein 6e-58 86
unnamed CAD42097.1 hypothetical protein Not tested PAI II 536 Protein 3e-61 85
z1216 CAD33786.1 Z1216 protein Not tested PAI I 536 Protein 2e-62 84

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_4589 YP_405940.1 hypothetical protein VFG0659 Protein 5e-65 97
SDY_4589 YP_405940.1 hypothetical protein VFG1677 Protein 8e-63 87
SDY_4589 YP_405940.1 hypothetical protein VFG1616 Protein 1e-61 85
SDY_4589 YP_405940.1 hypothetical protein VFG1527 Protein 8e-63 84