Gene Information

Name : insB (SDY_4518)
Accession : YP_405883.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS1 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 4227190 - 4227576 bp
Length : 387 bp
Strand : -
Note : Code: L; COG: COG1662

DNA sequence : 
ATGGACGAACAGTGGGGATACGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGGCTCCGGAAGAC
GGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGG
TGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACTTAATCAGCAAGCGATATACG
CAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGCTGGGACGGAAGTCGCTGTCGTT
CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAA

Protein sequence : 
MDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHLISKRYT
QRIERHNLNLRQHLARLGRLGRKSLSFSKSVELHDKVIGHYLNIKHYQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 9e-54 97
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 9e-54 97
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 9e-54 97
InsB (Tn1) CAJ77072.1 Transposase Not tested AbaR1 Protein 3e-51 96
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 4e-52 93
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 1e-51 91
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 1e-51 91
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-50 90
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 5e-51 90
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 7e-51 90
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 3e-49 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
insB YP_405883.1 IS1 ORF2 VFG0612 Protein 9e-50 88