Gene Information

Name : ybbA (SDY_0405)
Accession : YP_402104.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein YbbA
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 389100 - 389786 bp
Length : 687 bp
Strand : -
Note : Code: Q; COG: COG4181

DNA sequence : 
ATGCCAGCGGAAAACATTGTTGAAGTTCATCATCTTAAGAAGTCCGTCGGTCAGGGGGAGCATGAACTCTCCATCCTCAC
CGGAGTTGAGCTGGTTGTCAAACGTGGCGAGACCATCGCACTGGTGGGCGAGTCGGGATCGGGTAATTCAACCTTGCTGG
CGATCCTCGCCGGGCTGGATGACGGCAGCAGTGGCGAAGTGAGTCTGGTGGGACAACCGCTACATAATATGGACGAAGAA
GCGCGGGCAAAGTTGCGCGCGAAGCACGTAGGCTTTGTTTTTCAGTCGTTTATGTTAATTCCTACCCTTAACGCGCTGGA
AAACGTCGAGCTTCCGGCGCTGCTGCGTGGTGAGAGTAGCGCGGAAAGTCGTAACGGAGCGAAAGCGTTGCTCGAACAGT
TAGGGCTGGGTAAACGTCTGGATCATCTTCCGGCACAGCTTTCCGGCGGTGAACAGCAACGAGTGGCGCTGGCCCGAGCC
TTTAACGGTAGACCTGATGTGCTGTTTGCCGACGAACCCACCGGCAACCTTGACCGCCAGACCGGCGATAAAATTGCCGA
CCTGCTGTTTTCCCTCAACCGTGAGCATGGCACCACGTTGATAATGGTGACCCACGACCTGCAACTGGCGGCACGCTGCG
ACCGCTGCTTACGGCTGGTGAACGGGCAGTTGCAGGAGGAAGCATGA

Protein sequence : 
MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGNSTLLAILAGLDDGSSGEVSLVGQPLHNMDEE
ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLRLVNGQLQEEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybbA YP_402104.1 ABC transporter ATP-binding protein YbbA NC_012469.1.7686878. Protein 1e-39 43
ybbA YP_402104.1 ABC transporter ATP-binding protein YbbA NC_008702.1.4606598. Protein 2e-33 43
ybbA YP_402104.1 ABC transporter ATP-binding protein YbbA CP001581.1.gene798.p Protein 2e-36 41