Gene Information

Name : SDY_3860 (SDY_3860)
Accession : YP_405293.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3592288 - 3592809 bp
Length : 522 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence : 
GTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGT
TCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGG
AAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAG
TTCCGGCAGTTATTGTGGCGATACCAGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGA
ACGCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCATAA
CGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAACGGTGGGTTACCCCCAAACGAATCGGAAAAT
CGATACTGGAAAAACTCTAACTCGGTGGCCAGTTTTTGTTGA

Protein sequence : 
MTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQ
FRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESEN
RYWKNSNSVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-74 91
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-74 91
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-52 64
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-52 64
unnamed AAC31485.1 L0006 Not tested LEE Protein 7e-53 62
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-52 62
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 5e-53 62
Z5089 NP_290241.1 transposase Not tested LEE Protein 8e-53 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_3860 YP_405293.1 IS911 ORF2 VFG1484 Protein 7e-75 91
SDY_3860 YP_405293.1 IS911 ORF2 VFG0785 Protein 2e-53 62