Gene Information

Name : ygiX (SDY_3214)
Accession : YP_404714.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2976465 - 2977124 bp
Length : 660 bp
Strand : -
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGACCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTTCTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 2e-40 44
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 3e-31 44
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 4e-37 43
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 3e-34 43
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 4e-31 41
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-36 41
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 7e-36 41
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 3e-40 47
ygiX YP_404714.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 3e-32 42