Gene Information

Name : gspK (SDY_3100)
Accession : YP_404607.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : type II secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3156
EC number : -
Position : 2875622 - 2876599 bp
Length : 978 bp
Strand : +
Note : Code: U; COG: COG3156

DNA sequence : 
ATGATCACCTCACCACCAAAACGCGGAATGGCACTGGTCGTGGTGCTGGTATTGCTGGCGGTTATGATGCTGGTAACCAT
CACGCTTTCCGGGCGGATGCAGCAACAACTTGGGCGAACCCGCAGCCAGCAGGAGTACCAGCAGGCGCTGTGGTACAGCG
CCAGTGCAGAAAGCCTGGCGCTGAGTGCACTCAGTCTGAGCCTGAAAAATGAAAAGCGCGTGCATCTGGCACAGTCGTGG
GCTTCTGGCCCTCGTTTTTTCCCACTGCCGCAGGGGCAAATCGCCGTCACTCTGCGTGACGCACAGGCCTGCTTTAACCT
GAATGACCTCGCTCAGCCGACGACAGCGTCGCGTCCTATCGCGGTACAACAACTGATTGCCCTGATCTCACGCCTCAATG
TGCCTGCTTATCGGGCCGAACTGATAGCCGAAAGCCTGTGGGAGTTTATTGATGAAGACCGCAGCGTGCAGACGCGTCTG
GGCCGTGAAGACAGCGAATATCTCGCCCGCTCGGTGCCTTTCTACGCCGCCAATCAACCGCTGGCCGATATCAGCGAGAT
GCGCGTGGTGCAGGGAATGGACGCCGGGCTTTATCAAAAACTGAAACCGCTGGTCTGTGCGCTGCCGATGACCCGCCAGC
AAATCAACATCAATACTTTAGACGTCACGCAAAGTGTGATTCTTGAGGCGCTGTTTGACCCGTGGTTAAGCCCTGTTCAG
GCGCGGGCGTTATTACAACAACGTCCGGCGAAGGGCTGGGAAGATGTCGATCAGTTTCTTGCACAGCCGCTACTTGCTGA
CGTCGATGAGCGTACTAAAAAACAGCTAAAAACCGTCCTGAGCGTGGACAGCAATTACTTCTGGCTGCGTTCAGATATCA
CCGTGAATGAGATTGAACTGACGATGAACTCGTTAATTGTCCGCATGGGCCCACAACACTTTTCGGTTCTCTGGCATCAG
ACAGGAGAAAGTGAGTGA

Protein sequence : 
MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLAQSW
ASGPRFFPLPQGQIAVTLRDAQACFNLNDLAQPTTASRPIAVQQLIALISRLNVPAYRAELIAESLWEFIDEDRSVQTRL
GREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDPWLSPVQ
ARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQ
TGESE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspK YP_854400.1 type II secretion protein GspK Not tested PAI I APEC-O1 Protein 8e-126 99
gspK CAE85227.1 GspK, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-125 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspK YP_404607.1 type II secretion protein VFG2054 Protein 3e-127 100