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Name : gspE (SDY_3094) Accession : YP_404601.1 Strain : Shigella dysenteriae Sd197 Genome accession: NC_007606 Putative virulence/resistance : Virulence Product : type II secretion protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2870900 - 2872393 bp Length : 1494 bp Strand : + Note : Code: NU; COG: COG2804 DNA sequence : ATGGTGCCTGTAGCACAGGAAACCACCGCCAACACCGTGCGTCTGCCCTACAGTTTCAGCCGTCGGTTTAGCCTGGTGGC ATGGTGCGAAGCGTCGCTGGAGATCCTCCACGTTCATCCGCTATCGCTCTCTGTTTTGCAGGAGCTGCAGCGGGGGCTGA ACGCGCCCTTTACGCTGCGGCAAATCGACGAGGCCGAATTTGAACAGCGGCTGAATACGGTCTGGCAGCGGGACTCTTCC GAGGCCCGCCAGCTGATGGAAGAGCTCGGTTCTGCTGAGGACTTTTTTACTCTCGCTGAAGAATTGCCGGAAACGGAAGA TCTGCTGGAAAGCGACGACGACGCGCCAATCATCAAACTGATCAACGCTATGCTGGCAGAGGCGATTAAAGAAGGCGCTT CGGATATTCACATCGAGACATTTGAAAAGAGTCTGGTGATCCGTTTTCGTGTTGACGGCACATTACATGAAATGCTGCGC CCGGGGCGCAAACTGGCCTCGCTGCTGGTATCGCGTATTAAGGTGATGGCGCGGCTGGATATTGCCGAAAAGCGCGTACC ACAGGATGGGCGTATTGCGCTGCTGCTGGGCGGTCGGGCGATTGACGTGCGTGTCTCCACCATGCCTTCTGCCTGGGGCG AGCGCGTGGTGCTGCGACTGCTGGACAAAAACCAGGCCAGCCTGGCGCAGGAGCGTCTGGGGCTTAGCCAGCAACTGACC GCGCAGTTGCGCCAGCTGTTACACAAACCGCACGGCATCTTTCTGGTGACGGGGCCGACGGGTTCCGGCAAAAGCACCAC GCTGTACGCCGGATTGCAGGAGCTGAACAACCATTCGCGTAACATTCTCACGGTTGAAGACCCCATCGAATACATGATTG AAGGGATCGGTCAGACGCAGGTTAACACCCGCGTCGGCATGACCTTCGCCCGTGGCCTGCGCGCGATTTTGCGTCAGGAC CCGGATGTGGTGATGGTCGGTGAAATCCGCGATACCGAAACCGCAGAAATTGCCGTCCAGGCATCGCTTACAGGGCACCT GGTACTTTCCACGCTGCATACCAACACGGCGGTGGGGACGATCACGCGTTTGCAGGATATGGGCGTGGAGCCTTTCCTGC TCTCTTCCAGTCTGACTGGCGTGATGGCGCAGCGACTGGTTCGTACGCTGTGCCCCGACTGCCGCCAGGCCGCGCCTGCC ACTGACGAAGAAACACGCCTGCTGGGAATTACCGACGCCCGTACCGTCACTCTGTACCATCCGCAGGGCTGCCCCGCCTG TAACCACAAAGGTTTTCGCGGACGTACTGCCATCCATGAGCTGATCGTGGTGGATGCCACATTGCGTGATTTGATCCACC GTCAGGCCGGGGAGATGGAGCTGGAACGTTATGTCCGACAACACTCTGCGGGTATCCGCAGCAACGGCATTGAGAAAGTG CTCGCCGGAGAAACCTCTCTCGATGAAGTTCTGCGGGTAACCATGGAGGCGTAA Protein sequence : MVPVAQETTANTVRLPYSFSRRFSLVAWCEASLEILHVHPLSLSVLQELQRGLNAPFTLRQIDEAEFEQRLNTVWQRDSS EARQLMEELGSAEDFFTLAEELPETEDLLESDDDAPIIKLINAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLHEMLR PGRKLASLLVSRIKVMARLDIAEKRVPQDGRIALLLGGRAIDVRVSTMPSAWGERVVLRLLDKNQASLAQERLGLSQQLT AQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNHSRNILTVEDPIEYMIEGIGQTQVNTRVGMTFARGLRAILRQD PDVVMVGEIRDTETAEIAVQASLTGHLVLSTLHTNTAVGTITRLQDMGVEPFLLSSSLTGVMAQRLVRTLCPDCRQAAPA TDEETRLLGITDARTVTLYHPQGCPACNHKGFRGRTAIHELIVVDATLRDLIHRQAGEMELERYVRQHSAGIRSNGIEKV LAGETSLDEVLRVTMEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 0.0 | 97 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 0.0 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_404601.1 | type II secretion protein | VFG2048 | Protein | 0.0 | 100 |
| gspE | YP_404601.1 | type II secretion protein | VFG0182 | Protein | 1e-139 | 61 |
| gspE | YP_404601.1 | type II secretion protein | VFG1876 | Protein | 1e-132 | 56 |
| gspE | YP_404601.1 | type II secretion protein | VFG2426 | Protein | 3e-78 | 49 |
| gspE | YP_404601.1 | type II secretion protein | VFG1880 | Protein | 3e-80 | 44 |
