Gene Information

Name : gspC (SDY_3092)
Accession : YP_404599.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : type II secretion protein GspC
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3031
EC number : -
Position : 2867995 - 2868825 bp
Length : 831 bp
Strand : +
Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm

DNA sequence : 
ATGTTCTGGCTGATGCTGCTTATTATTTCTGCAAAAGTGGCGCATTCACTCTGGCGTTATTTCTCCTTTTCTGCGGAATA
TACGGTGGTTTCTCCATCGGTGAATAAACCGCCCCGTACGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCA
GCCAGCAAAACTGGTTTGGCAAATATCAGCCCGTCGCCGCACCGGTAAAACAACCCGAACCTGCACCTGTGGCCGAAACG
CGTCTTAATGTGGTGCTGCGCGGGATCGCCTTTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGT
CTATTTGCAGGGGGAACGGCCTGGTTCTCACAACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATC
AGGGAAAAATAGAGCGTCTGAGTCTGGCTGAAGAGGAGCGTTCCACGGTTGCTGTGACCCGTCAAAAAGCCATCAGTGAC
GAAGCAAAGCAAGCCGTTGCTGAACCTGCTGCCAGTGCGCCAGTTGAGCTCCCGGCTGCCGTGCGTCAGGCACTGGCGAA
AGATCCGCAGAAAATTTTTAACTATATCCAGCTTACGCCTGTGCATAAGGAGGGAATTGTCGGTTATGCAGTGAAACCGG
GGGCAGATCGTGCTCTGTTCGATGCCAGCGGTTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACT
GATCCACGAGCAATGATTGCTCTGATGCGGCAGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGC
GCGCCACGATATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MFWLMLLIISAKVAHSLWRYFSFSAEYTVVSPSVNKPPRTDAKTFDKNDVQLISQQNWFGKYQPVAAPVKQPEPAPVAET
RLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERPGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTRQKAISD
EAKQAVAEPAASAPVELPAAVRQALAKDPQKIFNYIQLTPVHKEGIVGYAVKPGADRALFDASGFKEGDIAIALNQQDFT
DPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-111 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_404599.1 type II secretion protein GspC VFG2046 Protein 3e-118 100