Gene Information

Name : SDY_2987 (SDY_2987)
Accession : YP_404501.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2758535 - 2758837 bp
Length : 303 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAAACCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTATCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAACGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKNQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVIAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDILKKATTYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 2e-39 98
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-39 98
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-39 97
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-39 97
unnamed AAF09021.1 unknown Not tested SHI-O Protein 7e-39 96
unnamed AAF09029.1 unknown Not tested SHI-O Protein 7e-39 96
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 3e-33 96
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 3e-33 96
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 4e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_2987 YP_404501.1 IS600 ORF1 VFG1707 Protein 6e-40 98