Gene Information

Name : SDY_2841 (SDY_2841)
Accession : YP_404371.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : ISSfl4 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2634493 - 2634813 bp
Length : 321 bp
Strand : +
Note : Code: L; COG: COG3436

DNA sequence :
ATGATATCTTTCCCTGCAGGTTCGCGTATCTGGCTGGTTGCAGGTATCACCGATATGCGAAATGGCTTTAACGGCCTGGC
CTCAAAAGTTCAGAACGTCCTGAAGGATGACCCGTTCTCCGGGCATCTGTTCATCTTCCGCGGACGCCGGGGTGACCAGA
TAAAAGTGTTGTGGGCTGACAGTGACGGACTGTGCCTCTTTACCAGACGCCTGGAGCGGGGCCGCTTCGTCTGGCCGGTC
ACCCGTGACGGCAAGGTGCACCTTACTCCGGCCCAGTTATCCATGCTTCTTGAGGGCATCGACTGGAAACGCTGTCCGTG
A

Protein sequence :
MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLFIFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPV
TRDGKVHLTPAQLSMLLEGIDWKRCP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 1e-43 97
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 1e-43 97
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 3e-43 96
ECO103_3553 YP_003223420.1 hypothetical protein Not tested LEE Protein 2e-38 78
Z4316 NP_289542.1 hypothetical protein Not tested OI-122 Protein 2e-38 78
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-36 75
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-36 75
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-36 75
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-36 75
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-35 75
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-36 75
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-37 75
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-35 75
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-36 75
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 6e-37 75
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-36 75
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-36 75
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 3e-29 74
unnamed AAL08461.1 unknown Not tested SRL Protein 2e-36 74
Z1160 NP_286695.1 hypothetical protein Not tested TAI Protein 2e-36 70
Z1599 NP_287103.1 hypothetical protein Not tested TAI Protein 2e-36 70
Z4338 NP_289563.1 hypothetical protein Not tested OI-122 Protein 3e-35 69
ECUMN_3364 YP_002414037.1 putative transposase ORF2, IS66 family Not tested Not named Protein 3e-36 69
ECO103_3567 YP_003223430.1 hypothetical protein Not tested LEE Protein 3e-35 69
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 3e-28 62
Z1163 NP_286698.1 hypothetical protein Not tested TAI Protein 7e-09 41
Z1602 NP_287106.1 hypothetical protein Not tested TAI Protein 7e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1665 Protein 1e-43 96
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1698 Protein 2e-37 75
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1709 Protein 6e-37 75
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG0792 Protein 6e-37 75
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1517 Protein 1e-29 74
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1052 Protein 1e-36 74
SDY_2841 YP_404371.1 ISSfl4 ORF2 VFG1737 Protein 9e-37 69