Gene Information

Name : SDY_2290 (SDY_2290)
Accession : YP_403858.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2080181 - 2080807 bp
Length : 627 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG
TCGTGACCGACTGGCACGTCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACT
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGG
CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG
CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCGGTGATGCTGCCAACTTACTGATTTAG

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNSNHNLPVAPNLLNQTFAPTAPNQVWVA
DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAIGDAANLLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-79 99
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 9e-79 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-79 99
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 9e-79 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 4e-79 99
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 5e-79 99
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-79 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-79 99
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-77 98
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-33 44
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-33 44
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-33 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_2290 YP_403858.1 IS600 ORF2 VFG1706 Protein 1e-79 99