Gene Information

Name : SDY_2005 (SDY_2005)
Accession : YP_403591.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1819095 - 1819346 bp
Length : 252 bp
Strand : -
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLE
RDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-32 100
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-32 100
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-32 100
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-32 100
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 5e-32 99
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-32 99
unnamed AAF09021.1 unknown Not tested SHI-O Protein 7e-32 99
unnamed AAF09029.1 unknown Not tested SHI-O Protein 7e-32 99
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 4e-07 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_2005 YP_403591.1 IS600 ORF1 VFG1707 Protein 2e-32 99