Gene Information

Name : SDY_1990 (SDY_1990)
Accession : YP_403580.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1807900 - 1808691 bp
Length : 792 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
GTGTGCCACTTCAGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGGTCGTGACCGACTGGCACG
TCTTCGTAAGGAGCTAAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACTCGAACCACAATCTGCCAG
TTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCGGACCTGACGTATGTTGCC
ACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGCGAAATTGTCGGCTACGCCATGGGAGAGCG
CATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTGCCGGGCTAATCCACCACT
CTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTGAAAACATCAATGTCGCGT
AAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAGCCTGAGCCACTATCGTTT
TAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTCAGCGTCGTCACTCTCGTC
TGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGTGCTTAAAAAAAGAACAAATGGTAGTGTC
CGCTATTGCCAGTACACCTCAGTCTTTATGGTTGATGAATGGCGGCGACTGGTTTATTGCGCTGGCAGATAA

Protein sequence :
MCHFRTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNSNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVA
TQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSR
KGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAVLKKRTNGSV
RYCQYTSVFMVDEWRRLVYCAGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-90 99
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-90 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-90 99
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-90 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-90 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-90 98
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 6e-90 98
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 6e-90 98
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-88 97
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-38 47
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-38 47
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-38 47
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-35 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-35 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1990 YP_403580.1 IS600 ORF2 VFG1706 Protein 2e-90 99