Gene Information

Name : sitD (SDY_1454)
Accession : YP_403086.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Virulence
Product : Iron transport protein, inner membrane component
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1333997 - 1334854 bp
Length : 858 bp
Strand : -
Note : Code: P; COG: COG1108

DNA sequence : 
ATGATGGCATTATTACTGGAGCCACTGCAGTTCACCTTTATGAGTCACGCACTGCTGATTTCACTGGTAGTTTCCATACC
CTGTGCGCTGCTGTCGGTCTTTCTGGTCCTGAAAGGTTGGGCACTGATGGGTGACGCGATGAGTCATGCGGTTTTTCCTG
GCATCGTGCTTACCTGGATTCTGGGGTTACCTCTGGCTACAGGGGCATTCGTCGCCGGAGTATTCTGCGCGGTGGCGACG
GGATACCTGAAAGACAACAGCCGAATCAAGCAAGATACAGTTATGGGGATTGTTTTTTCTGGCATGTTTGCCGCAGGTCT
GATCTTGTATATTGCAATCAAACCAGACGTACATCTTGACCATATTCTTTTCGGCGACATGCTCGGGATAACCATCGGCG
ATATAATCCAGACGGTGATTATTGCCGGGCTGGTTACACTTGTTATTAGCGTAAAATGGCGGGATTTTTTGCTGTTCAGC
TTTGATTATCAACAGGCGCAGGTAAGCGGTTTGCATACGAGATGGCTGCATTATGGGCTGCTGTGCATGGTTTCCCTGAC
CATTGTGGCGACGCTGAAAGCAGTAGGTATCATTCTCTCTATTTCTCTGCTCATTGCGCCTGGCGCCATTGCAGTACTCC
TGACACAACGCTTTCATATTACGCTCCTACTGGCGACTGGCATATCGGTAATAGTGTCAATGACTGGTGTCTGCCTGTCC
TTTTTTATCGACAGCGCACCAGCTCCGACGATTGTCGTCTTATTCGCGGTCGTGTTCATCATGACGTTTACCGTTACCAG
CATCAACGCACGCACAAAGGGAAACGCCCATACACAGGATCTGTTATCACCCAATTAG

Protein sequence : 
MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVAT
GYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHITLLLATGISVIVSMTGVCLS
FFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-75 68
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-76 68
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-76 68
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-76 68
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-76 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_403086.1 Iron transport protein, inner membrane component BAC0352 Protein 3e-76 68
sitD YP_403086.1 Iron transport protein, inner membrane component BAC0442 Protein 1e-54 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_403086.1 Iron transport protein, inner membrane component VFG0528 Protein 3e-76 68