Gene Information

Name : SDY_1421 (SDY_1421)
Accession : YP_403056.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1311754 - 1312056 bp
Length : 303 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCCCTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGGG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGPLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLG
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-39 98
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-39 98
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-39 97
unnamed AAF09021.1 unknown Not tested SHI-O Protein 9e-39 97
unnamed AAF09029.1 unknown Not tested SHI-O Protein 9e-39 97
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 5e-39 97
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-33 96
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-33 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1421 YP_403056.1 IS600 ORF1 VFG1707 Protein 2e-39 97