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Name : hofB (SDY_0137) Accession : YP_401860.1 Strain : Shigella dysenteriae Sd197 Genome accession: NC_007606 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 136297 - 137631 bp Length : 1335 bp Strand : - Note : integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; Code: NU; COG: COG2804 DNA sequence : ATGAATATTCCACAGCTCACGGCCCTGTGCCTGCGTTATCAGGGAGTCTTGCTGGATGCCCGCGAAGAAGTGGTTCATGT TGCGGTGGTCGATGCCCCCTCACATGAGTTGCTGGACGCATTGCATTTCGCTACCACCAAACGTATTGAGATCACCTGCT GGACGCGCCAACAAATGGAAGGTCACGCCAGTCGCACACAACAGACATTGCCCGTAGCTGTTCAGGAGAAGCATCAGCCC AAAGCAGAGTTGCTGACTCGAACGTTACAATCTGCACTGGAACAACGCGCGTCTGATATTCATATCGAACCAGCGGACAA TGCCTACCGCATCCGCTTGCGTATCGACGGCGTATTGCATCCTTTACCGGATGTTTCACCGGATGCCGGAGTCGCATTAA CCGCCAGATTAAAAGTGCTGGGAAACCTGGATATTGCGGAACATCGCCTGCCGCAGGACGGGCAATTCACTGTCGAACTA GCAGGAAACGCCGTCTCATTTCGTATTGCGACCTTACCATGTCGGGGTGGTGAAAAGGTGGTATTAAGGTTGTTACAGCA GGTGAGCCAGGCACTGGATGTTAACACGCTGGGAATGCAGCCGTTACAACTGGCGGACTTTGCTCATGCCTTGCAACAAC CGCAGGGACTGGTGCTGGTAACTGGCCCTACCGGCAGCGGCAAAACGGTCACGCTTTATAGTGCCCTGCAAAAGCTGAAT ACCGCTGACATTAATATTTGTAGCGTCGAAGATCCGGTTGAGATCCCCATAGCCGGACTAAACCAGACGCAAATTCATCC GCGTGCCGGACTCACCTTTCAGGGCGTTTTGCGTGCGTTATTGCGCCAGGATCCTGACGTCATTATGATCGGAGAGATCC GCGATGGCGAAACGGCAGAAATTGCCATTAAAGCCGCGCAAACCGGTCACCTGGTGTTGTCCACGCTACACACCAATTCC ACCACTGAAACGCTGGTACGTTTACAGCAAATGGGGGTCGCCCGCTGGATGCTATCATCGGCGCTTACGCTGGTAATAGC CCAGCGTCTGGTACGCAAACTTTGCCCACATTGTCGCCGCCAGCAAGGGGAGCCCATCCACATTCCAGACAATGTATGGC CATCGCCGCTGCCCCACTGGCAGGCACCCGGTTGTGTACATTGCTACCACGGTTTTTATGGTCGTACGGCCTTATTTGAA GTCCTGCCCATTACACCAGCCATACGCCAGCTTATTTCCTCTAATACTGAAGTTGAATCGCTGGAAACGCACGCCCGACA GGCGGGTATGCGAACGCTTTTTGAAAACGGCTGCCTGGCCGTGGAGCAAGGCTAA Protein sequence : MNIPQLTALCLRYQGVLLDAREEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQP KAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVEL AGNAVSFRIATLPCRGGEKVVLRLLQQVSQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNS TTETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFE VLPITPAIRQLISSNTEVESLETHARQAGMRTLFENGCLAVEQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-70 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-70 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_401860.1 | hypothetical protein | VFG2048 | Protein | 2e-71 | 47 |
| hofB | YP_401860.1 | hypothetical protein | VFG2426 | Protein | 1e-73 | 45 |
| hofB | YP_401860.1 | hypothetical protein | VFG0182 | Protein | 2e-69 | 44 |
| hofB | YP_401860.1 | hypothetical protein | VFG1876 | Protein | 1e-71 | 43 |
