Gene Information

Name : SDY_1124 (SDY_1124)
Accession : YP_402772.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1044783 - 1045496 bp
Length : 714 bp
Strand : +
Note : Code: L; COG: COG2801

DNA sequence :
GTGGCACATATCCGCACTCGCGAAACATATGGAACCCGGCGGCTCCAGACGGAGCTGGCAGAGAATGGCATCATCGTTGG
TCGTGACCGACTGGCATGTCTTCGTAAGGAGCTGAGGCTACGCTGTAAGCAGAAACGCAAGTTCAGAGCGACTACGAACC
CGAACCACAATCTGCCAGTTGCGCCAAATCTGCTGAACCAGACGTTCGCTCCTACAGCACCAAATCAGGTCTGGGTGGCG
GACCTGACGTATGTTGCCACACAGGAGGGATGGTTGTACCTCGCTGGCATCAAAGATGTTTATACGTGTGAAATTGTCGG
CTACGCCATGGGAGAGCGCATGACAAAAGAGCTGACAGGTAAAGCCCTGTTTATGGCGCTCAGGAGCCAGCGCCCACCTG
CCGGGCTAATCCACCACTCTGATCGAGGTTCACAGTACTGCGCATACGATTACCGGGTCATACAGGAGCAGTTTGGTCTG
AAAACATCAATGTCGCGTAAAGGTAACTGTTACGACAACGCTCCGATGGAAAGCTTCTGGGGAACGCTGAAAAATGAGAG
CCTGAGCCACTATCGTTTTAATAACCGGGATGAAGCCATCTCAGTAATACGGGAATACATTGAGATTTTCTACAATCGTC
AGCGTCGTCACTCTCGTCTGGGGAATATCTCCCCGGCAGCCTTCAGGGAAAAATATCATCAGATGGCTGCTTAA

Protein sequence :
MAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVA
DLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGL
KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 4e-108 99
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 1e-108 99
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 5e-108 99
unnamed AAF09030.1 unknown Not tested SHI-O Protein 1e-108 99
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 1e-108 99
unnamed AAF09022.1 unknown Not tested SHI-O Protein 1e-108 99
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-109 99
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-107 98
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-107 98
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-43 45
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-43 45
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-43 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 8e-41 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-40 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-40 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 7e-40 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1124 YP_402772.1 IS600 ORF2 VFG1706 Protein 2e-108 99
SDY_1124 YP_402772.1 IS600 ORF2 VFG1631 Protein 5e-41 44