Gene Information

Name : SDY_1064 (SDY_1064)
Accession : YP_402720.1
Strain : Shigella dysenteriae Sd197
Genome accession: NC_007606
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1000250 - 1000552 bp
Length : 303 bp
Strand : -
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAATGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCCCTTCCTGAAGGCCCTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGGTGGCTGAACTGGAATCTGAAATTCTGCAATTGCGTAAGGCGTTAAATGAAGCTTGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRMVLENQLSISEGASRLSLPEGPLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEACLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-38 97
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-38 97
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-38 96
unnamed AAF09021.1 unknown Not tested SHI-O Protein 7e-38 96
unnamed AAF09029.1 unknown Not tested SHI-O Protein 7e-38 96
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 4e-38 96
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 4e-31 95
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 4e-31 95
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 3e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SDY_1064 YP_402720.1 IS600 ORF1 VFG1707 Protein 1e-38 96